RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PIGTQ969N2 578 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 C18orf8Q96DM3 657 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 PWWP2AQ96N64 755 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 USP28Q96RU2 1077 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 AGAP2Q99490 1192 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 SPSB2Q99619 263 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 ZSCAN5AQ9BUG6 496 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CHRNA10Q9GZZ6 450 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 FAM83DQ9H4H8 585 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 KIR3DX1Q9H7L2 352 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 GDPD2Q9HCC8 539 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 RAD18Q9NS91 495 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 HAUS2Q9NVX0 235 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 IRAK4Q9NWZ3 460 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 IL1RAPL1Q9NZN1 696 aa7.73□□□□□ -1.17
USP54-211ENST00000474929 CNOT6Q9ULM6 557 aaKnown RBP7.73□□□□□ -1.17
USP54-211ENST00000474929 A0A1B0GX78 115 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 GTPBP10A4D1E9 387 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 KLHL33A6NCF5 533 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 CLDN4O14493 209 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 CDK2AP1O14519 115 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 KCNAB3O43448 404 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 TLX2O43763 284 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 CNOT3O75175 753 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 YEATS4O95619 227 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 TP53P04637 393 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 MTHFD1P11586 935 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 PRKCSHP14314 528 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 CD46P15529 392 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 DESP17661 470 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 TNFAIP3P21580 790 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 CHRNA4P43681 627 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 ATP11AP98196 1134 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 PTSQ03393 145 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 LBRQ14739 615 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 SLC9A5Q14940 896 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 RPE65Q16518 533 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 NKG7Q16617 165 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 CHRFAM7AQ494W8 412 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 PPP1R15BQ5SWA1 713 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 NLRP9Q7RTR0 991 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 YTHDF3Q7Z739 585 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 HIPK1Q86Z02 1210 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 ARHGEF19Q8IW93 802 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 ZNF592Q92610 1267 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 ZMYND19Q96E35 227 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 SEC16BQ96JE7 1060 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 KREMEN1Q96MU8 473 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 FRMD6Q96NE9 622 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 CRB3Q9BUF7 120 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 C19orf24Q9BVV8 132 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 ZCCHC2Q9C0B9 1178 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 IMP3Q9NV31 184 aaKnown RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 CRIM1Q9NZV1 1036 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 B4GALT7Q9UBV7 327 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 GNPTGQ9UJJ9 305 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 FOXD3Q9UJU5 478 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 CBLCQ9ULV8 474 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 HEBP2Q9Y5Z4 205 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 COLEC10Q9Y6Z7 277 aa7.72□□□□□ -1.17
USP54-211ENST00000474929 HRNRQ86YZ3 2850 aaPredicted RBP7.72□□□□□ -1.17
USP54-211ENST00000474929 A0A0J9YYE9 177 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 A0A1W2PQ72 361 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 FADS2P1A8MWK0 482 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 EIF3CLB5ME19 914 aaKnown RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 SUN1O94901 812 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 CDK14O94921 469 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ONECUT2O95948 504 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 TRBC1P01850 177 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 FAM157CP0CG43 387 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ST6GAL1P15907 406 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 UGT1A1P22309 533 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 CXCR2P25025 360 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 PTPN9P43378 593 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ZFP36L2P47974 494 aaKnown RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 DCDC1P59894 354 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 TRAF2Q12933 501 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 CDO1Q16878 200 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 YOD1Q5VVQ6 348 aaPredicted RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 CDHR3Q6ZTQ4 885 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 NDUFAF7Q7L592 441 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 SLFN11Q7Z7L1 901 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 ADGRG6Q86SQ4 1221 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 CXorf67Q86X51 503 aaPredicted RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 TRAPPC5Q8IUR0 188 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 SIAH3Q8IW03 269 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 SIRT6Q8N6T7 355 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 POGLUT1Q8NBL1 392 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 LMO3Q8TAP4 145 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 NSMCE1Q8WV22 266 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 PSMF1Q92530 271 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 GLYATL1Q969I3 302 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 PAGE5Q96GU1 130 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 TMX3Q96JJ7 454 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 EIF3CQ99613 913 aaKnown RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 MGME1Q9BQP7 344 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 XPO4Q9C0E2 1151 aaKnown RBP7.71□□□□□ -1.18
USP54-211ENST00000474929 PDCL3Q9H2J4 239 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 DEF6Q9H4E7 631 aa7.71□□□□□ -1.18
USP54-211ENST00000474929 PLEKHF2Q9H8W4 249 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms