RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PTTG1O95997 202 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF14P17017 642 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 PBX1P40424 430 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ALG10Q5BKT4 473 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ARL13AQ5H913 290 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 AADACL4Q5VUY2 407 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CES3Q6UWW8 571 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF527Q8NB42 609 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF563Q8TA94 476 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 HDAC2Q92769 488 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 NDC1Q9BTX1 674 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ARHGEF4Q9NR80 690 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 PIKFYVEQ9Y2I7 2098 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ZFC3H1O60293 1989 aaKnown RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 FFAR3O14843 346 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 DCLK1O15075 740 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 GPR42O15529 346 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 PRKYO43930 277 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SPARCP09486 303 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 MECP2P51608 486 aaKnown RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 YBEYP58557 167 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 AMIGO1Q86WK6 493 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 TOP6BLQ8N6T0 577 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SLC22A17Q8WUG5 538 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 DPF3Q92784 378 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 VRK1Q99986 396 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ATP6AP2A0A1C7CYW4 349 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 FNDC8Q8TC99 324 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 S100PBPQ96BU1 408 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 FEM1CQ96JP0 617 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 MECRQ9BV79 373 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 A0A087X0B3 334 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 C5orf51A6NDU8 294 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 RAB12Q6IQ22 244 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 LENG8Q96PV6 779 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ABHD16BQ9H3Z7 469 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 MEGF6O75095 1541 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SPTBP11277 2137 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SOX30O94993 753 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 MEDAGQ5VYS4 303 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF431Q8TF32 576 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SOCS4Q8WXH5 440 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SEMA3CQ99985 751 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 AARSD1Q9BTE6 412 aaKnown RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 C12orf65Q9H3J6 166 aaKnown RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 EXO5Q9H790 373 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CPNE5Q9HCH3 593 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 GDAP2Q9NXN4 497 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SNTG2Q9NY99 539 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 KLK14Q9P0G3 267 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 HSPE1-MOB4S4R3N1 261 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SALL3Q9BXA9 1300 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CYP17A1P05093 508 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 NOMO3P69849 1222 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CBX2Q14781 532 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ASB18Q6ZVZ8 466 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 METTL25Q8N6Q8 603 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 OR5T3Q8NGG3 340 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CPB2Q96IY4 423 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 COL21A1Q96P44 957 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 MAPKAP1Q9BPZ7 522 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 OSBPL7Q9BZF2 842 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 TAS2R8Q9NYW2 309 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 KCNN3Q9UGI6 736 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ASTN1O14525 1302 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CLDN11O75508 207 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 CLCN3P51790 818 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SLC10A7Q0GE19 358 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 OR5J2Q8NH18 312 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ZUFSPQ96AP4 578 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 SLC7A6OSQ96CW6 309 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF514Q96K75 400 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-209ENST00000472056 EXOC2Q96KP1 924 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 RAB11FIP5Q9BXF6 653 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 BLOC1S4Q9NUP1 217 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 TLR6Q9Y2C9 796 aa13.11□□□□□ -0.31
COL6A3-209ENST00000472056 HPRP00739 348 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PRPS1L1P21108 318 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 KCNA5P22460 613 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CSTF2P33240 577 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 IDH3AP50213 366 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CLCN4P51793 760 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 STXBP1P61764 594 aaKnown RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 RPL6Q02878 288 aaKnown RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 GTF2H2Q13888 395 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 CPSF6Q16630 551 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 GTF2H2CQ6P1K8 395 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 LRRN1Q6UXK5 716 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ERVK-5Q9HDB9 667 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 MAFFQ9ULX9 164 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ARP10275 920 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PPP3CAQ08209 521 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 PITRM1Q5JRX3 1037 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF782Q6ZMW2 699 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-209ENST00000472056 GALNT5Q7Z7M9 940 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 HAVCR2Q8TDQ0 301 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 SUSD6Q92537 303 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 NEUROD4Q9HD90 331 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 ESR1P03372 595 aa13.1□□□□□ -0.31
COL6A3-209ENST00000472056 IL7P13232 177 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms