RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 VPS26AO75436 327 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CPNE6O95741 557 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 TOP3BO95985 862 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 JUPP14923 745 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CD9P21926 228 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 PHBP35232 272 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 SKIV2L2P42285 1042 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CLDN6P56747 220 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ILF2Q12905 390 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ABRQ12979 859 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 GBX1Q14549 363 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CLPPQ16740 277 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 TTLL9Q3SXZ7 439 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ACSBG2Q5FVE4 666 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 RBM20Q5T481 1227 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 HECTD2Q5U5R9 776 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 NKAIN2Q5VXU1 208 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 RBM44Q6ZP01 1051 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 USP53Q70EK8 1073 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ZC3HC1Q86WB0 502 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CTAGE3PQ8IX95 158 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 TBC1D21Q8IYX1 336 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 GPATCH11Q8N954 259 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 SIDT2Q8NBJ9 832 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 PHC3Q8NDX5 983 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 GIMAP7Q8NHV1 300 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 INPP5DQ92835 1189 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 AHCYL2Q96HN2 611 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 GFM1Q96RP9 751 aaKnown RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 GPR21Q99679 349 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 SLC30A3Q99726 388 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 CPNE1Q99829 537 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 RHOJQ9H4E5 214 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 EPB41L1Q9H4G0 881 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 KIR3DX1Q9H7L2 352 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ANKZF1Q9H8Y5 726 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 TAS2R13Q9NYV9 303 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 TXNDC16Q9P2K2 825 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 ATXN7L1Q9ULK2 861 aaPredicted RBP11.65□□□□□ -0.54
VPS13D-204ENST00000469054 WASF3Q9UPY6 502 aa11.65□□□□□ -0.54
VPS13D-204ENST00000469054 D6RAR5 112 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 DUX1O43812 170 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 UBXN7O94888 489 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 ACSL3O95573 720 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FAM153BP0C7A2 387 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 AMD1P17707 334 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 TNFRSF8P28908 595 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 ATP5DP30049 168 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 GP5P40197 560 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 MAPK9P45984 424 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 PPM1FP49593 454 aaPredicted RBP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 CDKN2DP55273 166 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 TIAL1Q01085 375 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 TARDBPQ13148 414 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 NAB1Q13506 487 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 PLCL1Q15111 1095 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FAM153CQ494X1 144 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 UBAP2Q5T6F2 1119 aaKnown RBP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FAM45BPQ6NSW5 357 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 PIM3Q86V86 326 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 PPM1NQ8N819 430 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 DCBLD1Q8N8Z6 715 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 ACVR1CQ8NER5 493 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 OR5AR1Q8NGP9 310 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 CFAP61Q8NHU2 1237 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FAM45AQ8TCE6 357 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 CD200R1Q8TD46 325 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 UBXN4Q92575 508 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 ATXN7L3BQ96GX2 97 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 VPS39Q96JC1 886 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 DPYSL5Q9BPU6 564 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 MCMBPQ9BTE3 642 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FUT8Q9BYC5 575 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 TRIT1Q9H3H1 467 aaKnown RBP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 RDH14Q9HBH5 336 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 POLG2Q9UHN1 485 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 SLC24A2Q9UI40 661 aa11.64□□□□□ -0.55
VPS13D-204ENST00000469054 TRMT6Q9UJA5 497 aaKnown RBP11.64□□□□□ -0.55
VPS13D-204ENST00000469054 FAM95CA0A1B0GW59 222 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 MED19A0JLT2 244 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 FAM149AA5PLN7 773 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 FAM221BA6H8Z2 402 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CSO75390 466 aaKnown RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 RPN2P04844 631 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 PROS1P07225 676 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CBSLP0DN79 551 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 MYBL2P10244 700 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 ENO3P13929 434 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 HOXB3P14651 431 aaPredicted RBP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 TYRP1P17643 537 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 FDXRP22570 491 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CSF2RBP32927 897 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CBSP35520 551 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 PDX1P52945 283 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 PMS2P54278 862 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 CFHR1Q03591 330 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 PRKG2Q13237 762 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 EFTUD2Q15029 972 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS13D-204ENST00000469054 ISXQ2M1V0 245 aa11.63□□□□□ -0.55
VPS13D-204ENST00000469054 KLHL38Q2WGJ6 581 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms