RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SSPNQ14714 243 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 PTPRCAPQ14761 206 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 DUS1LQ6P1R4 473 aaKnown RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 FBXO38Q6PIJ6 1188 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 SNX20Q7Z614 316 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 AMIGO1Q86WK6 493 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 SYTL1Q8IYJ3 562 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GLIS1Q8NBF1 620 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 FDCSPQ8NFU4 85 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 PNPLA2Q96AD5 504 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 QKIQ96PU8 341 aaKnown RBP eCLIP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 ALS2CR12Q96Q35 445 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 HEMGNQ9BXL5 484 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GBA3Q9H227 469 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 PCMTD2Q9NV79 361 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 GPN3Q9UHW5 284 aaPredicted RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 FEZ2Q9UHY8 353 aaPredicted RBP12.91□□□□□ -0.34
HMGB3-204ENST00000448905 AP1M2Q9Y6Q5 423 aa12.91□□□□□ -0.34
HMGB3-204ENST00000448905 hCG_1818297A0A087WSY0 165 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 AGAP14A8MT82 685 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 AKR1B15C9JRZ8 316 aaPredicted RBP12.9□□□□□ -0.34
HMGB3-204ENST00000448905 APOC4-APOC2K7ER74 178 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 KDM1AO60341 852 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 SORBS2O94875 1100 aaKnown RBP12.9□□□□□ -0.34
HMGB3-204ENST00000448905 APOC2P02655 101 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 CA5AP35218 305 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 RORAP35398 523 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 COPS2P61201 443 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 RPA4Q13156 261 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 LAMB3Q13751 1172 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 EIF2S3LQ2VIR3 472 aaKnown RBP12.9□□□□□ -0.34
HMGB3-204ENST00000448905 BBS12Q6ZW61 710 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 TAS2R42Q7RTR8 314 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 NXPE1Q8N323 547 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 CLEC1AQ8NC01 280 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 PHC3Q8NDX5 983 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 OR1L3Q8NH93 324 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 PRR7Q8TB68 274 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 ADAMTS17Q8TE56 1095 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 TM9SF4Q92544 642 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 TFGQ92734 400 aaPredicted RBP12.9□□□□□ -0.34
HMGB3-204ENST00000448905 TCTN2Q96GX1 697 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 CALR3Q96L12 384 aaKnown RBP12.9□□□□□ -0.34
HMGB3-204ENST00000448905 MFRPQ9BY79 579 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 CASS4Q9NQ75 786 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 ZDHHC3Q9NYG2 299 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 FKBPLQ9UIM3 349 aa12.9□□□□□ -0.34
HMGB3-204ENST00000448905 FLNCQ14315 2725 aa12.9□□□□□ -0.35
HMGB3-204ENST00000448905 UTP20O75691 2785 aaKnown RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 TCP11X1B4DZS4 312 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 DDX3YO15523 660 aaKnown RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 ZNF749O43361 778 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 MFAP3LO75121 409 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 IPO13O94829 963 aaKnown RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 LCA5LO95447 670 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 PRLHRP49683 370 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 TMPRSS15P98073 1019 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 XIAPP98170 497 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 NCF4Q15080 339 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 SPA17Q15506 151 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 KYNUQ16719 465 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 ANKRD20A2Q5SQ80 823 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 ANKRD20A1Q5TYW2 823 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 PRAMEF17Q5VTA0 474 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 ANKRD20A3Q5VUR7 823 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 MLIPQ5VWP3 458 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 LYPLAL1Q5VWZ2 237 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 LCN10Q6JVE6 187 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 DARS2Q6PI48 645 aaKnown RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 DAAM2Q86T65 1068 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 CDKL3Q8IVW4 592 aaPredicted RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 VSTM4Q8IW00 320 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 IQCKQ8N0W5 287 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 ZBTB2Q8N680 514 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 RMDN2Q96LZ7 410 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 PPM1MQ96MI6 270 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 TRAPPC9Q96Q05 1148 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 SMAD5Q99717 465 aaKnown RBP12.89□□□□□ -0.35
HMGB3-204ENST00000448905 PITPNM3Q9BZ71 974 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 FAM96AQ9H5X1 160 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 POLG2Q9UHN1 485 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 EFR3BQ9Y2G0 817 aa12.89□□□□□ -0.35
HMGB3-204ENST00000448905 F8W8V4 182 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 BTN3A3O00478 584 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 BTN3A1O00481 513 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 SEMA7AO75326 666 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 OR2B3O76000 313 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ST6GAL1P15907 406 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 OTX2P32243 289 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ADRA1AP35348 466 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 LMAN1P49257 510 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 DCDP81605 110 aaKnown RBP12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ABRQ12979 859 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 PRKG2Q13237 762 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ELOAQ14241 798 aaKnown RBP12.88□□□□□ -0.35
HMGB3-204ENST00000448905 PTCHD3Q3KNS1 767 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 ZRANB3Q5FWF4 1079 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 VWA5B1Q5TIE3 1220 aa12.88□□□□□ -0.35
HMGB3-204ENST00000448905 TMTC1Q8IUR5 882 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms