RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 ANKRD52Q8NB46 1076 aa3□□□□□ -1.93
CLK1-204ENST00000432425 C1orf131Q8NDD1 294 aaKnown RBP3□□□□□ -1.93
CLK1-204ENST00000432425 POM121L2Q96KW2 1035 aa3□□□□□ -1.93
CLK1-204ENST00000432425 SGK494Q96LW2 274 aa3□□□□□ -1.93
CLK1-204ENST00000432425 CEP295NLQ96MC4 621 aa3□□□□□ -1.93
CLK1-204ENST00000432425 ABHD6Q9BV23 337 aa3□□□□□ -1.93
CLK1-204ENST00000432425 TRIM15Q9C019 465 aa3□□□□□ -1.93
CLK1-204ENST00000432425 HRH4Q9H3N8 390 aa3□□□□□ -1.93
CLK1-204ENST00000432425 KLHL8Q9P2G9 620 aaPredicted RBP3□□□□□ -1.93
CLK1-204ENST00000432425 PYGO1Q9Y3Y4 419 aa3□□□□□ -1.93
CLK1-204ENST00000432425 COL2A1P02458 1487 aaPredicted RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 A0A087WW49 117 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 MITFO75030 526 aaPredicted RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 PTMAP06454 111 aaKnown RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 DPEP1P16444 411 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 TYMPP19971 482 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 TM4SF1P30408 202 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 CDR2Q01850 454 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 PPARDQ03181 441 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 MELKQ14680 651 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 DLG2Q15700 870 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 CCDC30Q5VVM6 783 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 RSRC2Q7L4I2 434 aaKnown RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 GTSCR1Q86UQ5 136 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 ZNF843Q8N446 348 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 CPSF7Q8N684 471 aaKnown RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 TMEM178AQ8NBL3 297 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 SUSD6Q92537 303 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 ZNF689Q96CS4 500 aaPredicted RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 MCRIP2Q9BUT9 160 aaKnown RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 RTN4RQ9BZR6 473 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 UBXN6Q9BZV1 441 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 PLCXD1Q9NUJ7 323 aa2.99□□□□□ -1.93
CLK1-204ENST00000432425 EXOGQ9Y2C4 368 aaKnown RBP2.99□□□□□ -1.93
CLK1-204ENST00000432425 A0A1W2PR77 199 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 PRR32B1ATL7 298 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 AP3D1O14617 1153 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 ATP6V0E1O15342 81 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SSX4O60224 188 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 CDC123O75794 336 aaPredicted RBP2.98□□□□□ -1.93
CLK1-204ENST00000432425 AP2A2O94973 939 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 RAF1P04049 648 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TPOP07202 933 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 MMP9P14780 707 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 MAPK4P31152 587 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 DCAF7P61962 342 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 AIMP2Q13155 320 aaKnown RBP2.98□□□□□ -1.93
CLK1-204ENST00000432425 P2RY6Q15077 328 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 DCAF10Q5QP82 559 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 MAATS1Q7Z4T9 603 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SCML4Q8N228 414 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TTC39CQ8N584 583 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 HSD17B8Q92506 261 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 ERLEC1Q96DZ1 483 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SAT2Q96F10 170 aaPredicted RBP2.98□□□□□ -1.93
CLK1-204ENST00000432425 PRAC1Q96KF2 57 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 ATOH8Q96SQ7 321 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 KRTAP4-3Q9BYR4 195 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TMX4Q9H1E5 349 aaPredicted RBP2.98□□□□□ -1.93
CLK1-204ENST00000432425 ACKR4Q9NPB9 350 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SWAP70Q9UH65 585 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 OSGIN1Q9UJX0 560 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.98□□□□□ -1.932e-27■■■■■ 27.1
CLK1-204ENST00000432425 A0A1W2PN81 502 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 PTGES3LE9PB15 166 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 E9PI62 339 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 H7C423 109 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TO15178 435 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 CRLF1O75462 422 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 PIGNO95427 931 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 VPREB1P12018 145 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TNFAIP3P21580 790 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 CHRNA7P36544 502 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SLC6A12P48065 614 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 MFAP4P55083 255 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TMF1P82094 1093 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 SP3Q02447 781 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 PRKCZQ05513 592 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 HNRNPDQ14103 355 aaKnown RBP2.98□□□□□ -1.93
CLK1-204ENST00000432425 TEAD2Q15562 447 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 LPAL2Q16609 132 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 FAM180BQ6P0A1 224 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 LINGO4Q6UY18 593 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 Q6ZSR9 355 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 MAGED4Q96JG8 741 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 P2RY12Q9H244 342 aa2.98□□□□□ -1.93
CLK1-204ENST00000432425 TDRD15B5MCY1 1934 aaKnown RBP2.97□□□□□ -1.93
CLK1-204ENST00000432425 LNP1A1A4G5 178 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 DCXO43602 365 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 PRKRAO75569 313 aaKnown RBP2.97□□□□□ -1.93
CLK1-204ENST00000432425 LDHCP07864 332 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 CEBPBP17676 345 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 EFNA1P20827 205 aaPredicted RBP2.97□□□□□ -1.93
CLK1-204ENST00000432425 HADHAP40939 763 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 GARSP41250 739 aaKnown RBP2.97□□□□□ -1.93
CLK1-204ENST00000432425 PDX1P52945 283 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 CX3CL1P78423 397 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 MDH1BQ5I0G3 518 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 CYP4A22Q5TCH4 519 aa2.97□□□□□ -1.93
CLK1-204ENST00000432425 TRIM65Q6PJ69 517 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms