RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 A0A1W2PPM1 405 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 TM9SF1O15321 606 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SGTAO43765 313 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 RFPL1O75677 317 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SYF2O95926 243 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 ZNF806P0C7X5 589 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 F3P13726 295 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 CRHR1P34998 444 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 HSD17B2P37059 387 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 NBL1P41271 181 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 C1orf61Q13536 156 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ZNF460Q14592 562 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 TCEA2Q15560 299 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ACSBG2Q5FVE4 666 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 TPRG1LQ5T0D9 272 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 KCTD16Q68DU8 428 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 UBE2R2Q712K3 238 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 C11orf96Q7Z7L8 435 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 GPSM1Q86YR5 675 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 RBM12BQ8IXT5 1001 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 CYP4X1Q8N118 509 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 LKAAEAR1Q8TD35 194 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ATL1Q8WXF7 558 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 RAD51AP1Q96B01 352 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 CCDC126Q96EE4 140 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 CCDC97Q96F63 343 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 EGFL8Q99944 293 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SH3GL2Q99962 352 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 MRPL57Q9BQC6 102 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 LRRC61Q9BV99 259 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 RAB11FIP5Q9BXF6 653 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 MRPL46Q9H2W6 279 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 TFB2MQ9H5Q4 396 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 TM7SF3Q9NS93 570 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 EURLQ9NYK6 297 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SLC23A2Q9UGH3 650 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SLCO1B1Q9Y6L6 691 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 HMX2A2RU54 273 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 B4DGG1 531 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 SDC3O75056 442 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ANXA5P08758 320 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 TPBGLP0DKB5 382 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ENGP17813 658 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 TFEBP19484 476 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 AK4P27144 223 aaPredicted RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 HPDP32754 393 aaPredicted RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 MAGEA12P43365 314 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 AP1S2P56377 157 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 IRX4P78413 519 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 SLC18A2Q05940 514 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 PLCL1Q15111 1095 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 AASDHQ4L235 1098 aaPredicted RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 PPM1JQ5JR12 505 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 HHATQ5VTY9 493 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ABRAXAS1Q6UWZ7 409 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 NAPRTQ6XQN6 538 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 DCUN1D3Q8IWE4 304 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 TBC1D21Q8IYX1 336 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 TCAIMQ8N3R3 496 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 OR6C4Q8NGE1 309 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 RHEBL1Q8TAI7 183 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 KCTD4Q8WVF5 259 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ZFPM2Q8WW38 1151 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 DYDC1Q8WWB3 177 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ZBTB9Q96C00 473 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 NXNL1Q96CM4 212 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 UBXN10Q96LJ8 280 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 CNOT10Q9H9A5 744 aaKnown RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 PARVBQ9HBI1 364 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 ZNF446Q9NWS9 450 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 MKS1Q9NXB0 559 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 CD274Q9NZQ7 290 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 TDRKHQ9Y2W6 561 aaKnown RBP9.87□□□□□ -0.83
CD44-207ENST00000425428 CABIN1Q9Y6J0 2220 aa9.87□□□□□ -0.83
CD44-207ENST00000425428 SUPT3HB4E1H0 165 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 AGPSO00116 658 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 YY2O15391 372 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 FFAR2O15552 330 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SPAG7O75391 227 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SUPT3HO75486 399 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SASH3O75995 380 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 FUCA1P04066 466 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ZNF883P0CG24 379 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 GFAPP14136 432 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 CD1DP15813 335 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 EPHA8P29322 1005 aaPredicted RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 GLRBP48167 497 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 DUSP3P51452 185 aaPredicted RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 PRAMEF14Q5SWL7 426 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 KLHL35Q6PF15 583 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PIWIL4Q7Z3Z4 852 aaKnown RBP9.86□□□□□ -0.83
CD44-207ENST00000425428 EXOC3L1Q86VI1 746 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 TAX1BP1Q86VP1 789 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SLC22A9Q8IVM8 553 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 MINDY1Q8N5J2 469 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 SUMF1Q8NBK3 374 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 ACVR1CQ8NER5 493 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 PPP1R14CQ8TAE6 165 aa9.86□□□□□ -0.83
CD44-207ENST00000425428 RDH11Q8TC12 318 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms