RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DRICH1Q6PGQ1 229 aaPredicted RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 ZNF438Q7Z4V0 828 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 RBM23Q86U06 439 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 CPNE9Q8IYJ1 553 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 CELF5Q8N6W0 485 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 FNDC5Q8NAU1 212 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 KYQ8NBH2 561 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 DENND1AQ8TEH3 1009 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 TCEAL3Q969E4 200 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PPP1R16AQ96I34 528 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 SPATA13Q96N96 652 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 MOGAT1Q96PD6 335 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PKP2Q99959 881 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 RACGAP1Q9H0H5 632 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 RBM22Q9NW64 420 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP54-205ENST00000424265 PRPF19Q9UMS4 504 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 PLXNA1Q9UIW2 1896 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ZNFX1Q9P2E3 1918 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 PNMA8CA0A1B0GUJ8 204 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 F8W036 122 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 TSHRP16473 764 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ERCC2P18074 760 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 MATN1P21941 496 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 SNRPD1P62314 119 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 SLC12A1Q13621 1099 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PDGFRLQ15198 375 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 TAB1Q15750 504 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 SSX2Q16385 188 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 GRTP1Q5TC63 336 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 KRT73Q86Y46 540 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 BEND7Q8N7W2 519 aaPredicted RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 ZBTB44Q8NCP5 570 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 FBXO30Q8TB52 745 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 TSPAN17Q96FV3 270 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 NUAK2Q9H093 628 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ERVK-19Q9WJR5 959 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PKP3Q9Y446 797 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 HMX3A6NHT5 357 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CBX4O00257 560 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 GRM6O15303 877 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 WDR47O94967 919 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 RALBP11234 206 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 TGM1P22735 817 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 LSM3P62310 102 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 GAD2Q05329 585 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 RTP2Q5QGT7 225 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 FCRLBQ6BAA4 426 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 LRRC8EQ6NSJ5 796 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CHST9Q7L1S5 443 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 OR10T2Q8NGX3 314 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 MCFD2Q8NI22 146 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 RIT1Q92963 219 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ZNF578Q96N58 590 aaPredicted RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 OPALINQ96PE5 141 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 NPY6RQ99463 290 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ZFP14Q9HCL3 533 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 A0A1W2PPM1 405 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 OR5K3A6NET4 321 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 MEIS3P2A8K0S8 358 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 TBL1XO60907 577 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 JCHAINP01591 159 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 PBX3P40426 434 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 WNT7BP56706 349 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 TAS2R40P59535 323 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 TXNL4AP83876 142 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 UBAP2Q5T6F2 1119 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 MSANTD2Q6P1R3 559 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ERICH5Q6P6B1 374 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 LYPD8Q6UX82 237 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ZNF517Q6ZMY9 492 aaPredicted RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 RASSF6Q6ZTQ3 369 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 SVOPQ8N4V2 548 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 DHRSXQ8N5I4 330 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 OR8K5Q8NH50 307 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 TRMT2BQ96GJ1 504 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 NARS2Q96I59 477 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 CNDP1Q96KN2 507 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 PPP1R36Q96LQ0 422 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CSPG4P5Q96PW8 444 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 PDCD10Q9BUL8 212 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ENOPH1Q9UHY7 261 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 NR2E1Q9Y466 385 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 SDR42E2A6NKP2 422 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CHADO15335 359 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 DDX3YO15523 660 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 GATCO43716 136 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 HEXBP07686 556 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CYP2A6P11509 494 aaPredicted RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 IDUAP35475 653 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CXCR3P49682 368 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CDH17Q12864 832 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 RFTN1Q14699 578 aaPredicted RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 VWA5B1Q5TIE3 1220 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 ZNF565Q8N9K5 539 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 FBXW5Q969U6 566 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 CAB39LQ9H9S4 337 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 RAB23Q9ULC3 237 aa9.65□□□□□ -0.86
USP54-205ENST00000424265 DIMT1Q9UNQ2 313 aaKnown RBP9.65□□□□□ -0.86
USP54-205ENST00000424265 COG5Q9UP83 839 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms