RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 Q6ZVL8 140 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 UBE2R2Q712K3 238 aaPredicted RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 PIH1D2Q8WWB5 315 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 WRAP53Q9BUR4 548 aaKnown RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 CCM2LQ9NUG4 571 aaPredicted RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 DHRS7Q9Y394 339 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 AGRPO00253 132 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 TAPBPO15533 448 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 HS6ST1O60243 411 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 WISP3O95389 354 aaPredicted RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 SLC5A2P31639 672 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 HMGCLP35914 325 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 CYP27C1Q4G0S4 372 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 PLPP4Q5VZY2 271 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 SPRED2Q7Z698 418 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 ADAMTSL2Q86TH1 951 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 DDX53Q86TM3 631 aaKnown RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 RBFAQ8N0V3 343 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 OR2T12Q8NG77 320 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 PXYLP1Q8TE99 480 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 MUS81Q96NY9 551 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 ACAT2Q9BWD1 397 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 MRPS26Q9BYN8 205 aaKnown RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 INTS6Q9UL03 887 aaKnown RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 ITM2BQ9Y287 266 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 HCFC2Q9Y5Z7 792 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 TFPTP0C1Z6 253 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 CHRNB3Q05901 458 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 B3GNT6Q6ZMB0 384 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 TMEM150AQ86TG1 271 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 CHERPQ8IWX8 916 aaKnown RBP13.13□□□□□ -0.31
VPS54-203ENST00000409558 BPIFB6Q8NFQ5 453 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 PLD4Q96BZ4 506 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 CGREF1Q99674 301 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 INPP5KQ9BT40 448 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 DLGAP4Q9Y2H0 992 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 PRKAB1Q9Y478 270 aa13.13□□□□□ -0.31
VPS54-203ENST00000409558 MAGEB3O15480 346 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 PRKD3O94806 890 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 OTCP00480 354 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TCF3P15923 654 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TADA1Q96BN2 335 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ASB2Q96Q27 587 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ATP13A3Q9H7F0 1226 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ACTR3BQ9P1U1 418 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 FAF1Q9UNN5 650 aaPredicted RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 EIF3LQ9Y262 564 aaKnown RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 PER2O15055 1255 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 CST1P01037 141 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 NFKB2Q00653 900 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 RCAN2Q14206 197 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 SUSD1Q6UWL2 747 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ZNF621Q6ZSS3 439 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TICAM1Q8IUC6 712 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 C10orf111Q8N326 155 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TRPV3Q8NET8 790 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ELMO1Q92556 727 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TMBIM1Q969X1 311 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 COPS8Q99627 209 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 DPH2Q9BQC3 489 aaPredicted RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 FNIP2Q9P278 1114 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 GNPTGQ9UJJ9 305 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 VPS9D1Q9Y2B5 631 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TBC1D30Q9Y2I9 924 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 COQ6Q9Y2Z9 468 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 hCG_2039718K7EN88 272 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 STK16O75716 305 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 FKBP9O95302 570 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TRBC1P01850 177 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 C8AP07357 584 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 HIST1H2AGP0C0S8 130 aaPredicted RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 HIST1H2ADP20671 130 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 HRH2P25021 359 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 SERPINA4P29622 427 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 RPS9P46781 194 aaKnown RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 NR1H2P55055 460 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ADARP55265 1226 aaKnown RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 ESRRGP62508 458 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 SIM2Q14190 667 aaPredicted RBP13.12□□□□□ -0.31
VPS54-203ENST00000409558 PTCHD3Q3KNS1 767 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TMEM26Q6ZUK4 368 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 FKBP9P1Q75LS8 142 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ITIH5Q86UX2 942 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 HIST1H2AHQ96KK5 128 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 HIST1H2AJQ99878 128 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 H2AFJQ9BTM1 129 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 LRTM1Q9HBL6 345 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 PCDHA9Q9Y5H5 950 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 WNT6Q9Y6F9 365 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 PRR23AA6NEV1 266 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ANTXRLA6NF34 631 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 TBC1D4O60343 1298 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 IGSF6O95976 241 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 DGKAP23743 735 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 ALDH4A1P30038 563 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 HLA-FP30511 346 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 SLC26A3P40879 764 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 PLEKHG6Q3KR16 790 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 CCDC81Q6ZN84 652 aa13.12□□□□□ -0.31
VPS54-203ENST00000409558 GPR141Q7Z602 305 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms