RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PDSS1Q5T2R2 415 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FAM91A1Q658Y4 838 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 HGSNATQ68CP4 663 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ABHD15Q6UXT9 468 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 WASH2PQ6VEQ5 465 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ATAD1Q8NBU5 361 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 HCAR2Q8TDS4 363 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SGCDQ92629 289 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 KCNN1Q92952 543 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZC3H10Q96K80 434 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 C5orf34Q96MH7 638 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FCRL4Q96PJ5 515 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MRI1Q9BV20 369 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ELL3Q9HB65 397 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 B3GAT2Q9NPZ5 323 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TRIM36Q9NQ86 728 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ATPIF1Q9UII2 106 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IKZF2Q9UKS7 526 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 POMPQ9Y244 141 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 BTRCQ9Y297 605 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MRPS23Q9Y3D9 190 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PCDHA2Q9Y5H9 948 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 C10orf71Q711Q0 1435 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CLTCQ00610 1675 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DUOX1Q9NRD9 1551 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CAPN8A6NHC0 703 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 LRRC72A6NJI9 287 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 EFCAB9A8MZ26 197 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TNFRSF10BO14763 440 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 AXIN1O15169 862 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZBTB22O15209 634 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ACOX3O15254 700 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 INSIG1O15503 277 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ALPPP05187 535 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 UGT2B4P06133 528 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF286BP0CG31 522 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SPATA31C1P0DKV0 1188 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF30P17039 623 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TACR2P21452 398 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PTGIRP43119 386 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MAGEA2P43356 314 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IDH3AP50213 366 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DNAJB13P59910 316 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 HERVK_113P63132 956 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SMAD3P84022 425 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 RALGDSQ12967 914 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MKRN4PQ13434 485 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DUSP28Q4G0W2 176 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ARL13AQ5H913 290 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 KCTD8Q6ZWB6 473 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 OR4C15Q8NGM1 316 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 NEK7Q8TDX7 302 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ERVK-6Q9BXR3 956 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SDHAF3Q9NRP4 125 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TRNAU1APQ9NX07 287 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TAS2R14Q9NYV8 317 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 P2RX2Q9UBL9 471 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 RAI2Q9Y5P3 530 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PRAMEF33A0A0G2JMD5 474 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DLGAP1O14490 977 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PRAMEF10O60809 474 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ERAL1O75616 437 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 SCGNO76038 276 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SAGP10523 405 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF3P17036 446 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 MPSTP25325 297 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ARL2P36404 184 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 AKR1D1P51857 326 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 PPP2R2BQ00005 443 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 RBBP4Q09028 425 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 KCTD19Q17RG1 926 aaPredicted RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 LRIF1Q5T3J3 769 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 NPNTQ6UXI9 565 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 SAMD7Q7Z3H4 446 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 AMIGO1Q86WK6 493 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 NUDT13Q86X67 352 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CHERPQ8IWX8 916 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 ANKFN1Q8N957 763 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OR56A1Q8NGH5 318 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 BHMTQ93088 406 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF304Q9HCX3 659 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 FAM105AQ9NUU6 356 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DMAC2Q9NW81 257 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 MAT2BQ9NZL9 334 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 MGAT4BQ9UQ53 548 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 FFAR3O14843 346 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GPR42O15529 346 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 B3GALT2O43825 422 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DFNA5O60443 496 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 USP12O75317 370 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 VNN2O95498 520 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HSD3B1P14060 373 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HSD3B2P26439 372 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 OR2B6P58173 313 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF234Q14588 700 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 HACD2Q6Y1H2 254 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 GK5Q6ZS86 529 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CYS1Q717R9 158 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 KCNK18Q7Z418 384 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms