RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BBS4Q96RK4 519 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RAD9AQ99638 391 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 NUF2Q9BZD4 464 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TKTL2Q9H0I9 626 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 THAP2Q9H0W7 228 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RPF1Q9H9Y2 349 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PPANQ9NQ55 473 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 KLC4Q9NSK0 619 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM248Q9NWD8 314 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 OR6C3Q9NZP0 311 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RNF7Q9UBF6 113 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DNAJB4Q9UDY4 337 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 POLLQ9UGP5 575 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 HACL1Q9UJ83 578 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 UBE4BO95155 1302 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 OR6C68A6NDL8 312 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MFSD2BA6NFX1 497 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 FAM47DPA6NHR8 397 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 HNRNPCL2B2RXH8 293 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 E7ENX8 843 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 TRIM77I1YAP6 450 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 TLR4O00206 839 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SMAD6O43541 496 aaKnown RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 BUB1O43683 1085 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SPOPO43791 374 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 STRNO43815 780 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MOCS3O95396 460 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 STAMBPO95630 424 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 CHRM2P08172 466 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SLC2A4P14672 509 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 HOXB9P17482 250 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 ITGAXP20702 1163 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MATN1P21941 496 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 JAK1P23458 1154 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 CCND3P30281 292 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 GNL1P36915 607 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 CLDN2P57739 230 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 EEFSECP57772 596 aaKnown RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SIRPAP78324 504 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 GIT2Q14161 759 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 PTPRRQ15256 657 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 DPYSL2Q16555 572 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 HADHQ16836 314 aaKnown RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 NADK2Q4G0N4 442 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 LBHQ53QV2 105 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SULT1C3Q6IMI6 304 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 ARSKQ6UWY0 536 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 ZBTB49Q6ZSB9 765 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 BNIPLQ7Z465 357 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 FBXO39Q8N4B4 442 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 B3GALNT2Q8NCR0 500 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 GDPD5Q8WTR4 605 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SELENOMQ8WWX9 145 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SARAFQ96BY9 339 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 CTHRC1Q96CG8 243 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 AP2M1Q96CW1 435 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 RRNAD1Q96FB5 475 aaKnown RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 BSCL2Q96G97 398 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 ASCL2Q99929 193 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF416Q9BWM5 594 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 PPIL3Q9H2H8 161 aaKnown RBP4.03□□□□□ -1.76
HMGB1-204ENST00000399489 KCNK15Q9H427 330 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 EPB41L5Q9HCM4 733 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM161AQ9NX61 479 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 QPCTLQ9NXS2 382 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 NLKQ9UBE8 527 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 BAIAP2L1Q9UHR4 511 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 SLC24A2Q9UI40 661 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 CDC14AQ9UNH5 594 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MAB21L2Q9Y586 359 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 MAU2Q9Y6X3 613 aa4.03□□□□□ -1.76
HMGB1-204ENST00000399489 UTYO14607 1347 aa4.03□□□□□ -1.77
HMGB1-204ENST00000399489 DNAJC9-AS1A6NH13 148 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 DSCR3O14972 297 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 CASC3O15234 703 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GPC4O75487 556 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 CREG1O75629 220 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 RSL1D1O76021 490 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GLCEO94923 617 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TJP3O95049 919 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 MT-CYBP00156 380 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 LIPFP07098 398 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TPM1P09493 284 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 ALDOCP09972 364 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 VPREB1P12018 145 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GJA1P17302 382 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 LBPP18428 481 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 ADRA1DP25100 572 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 PTPN6P29350 595 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 USP8P40818 1118 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 OR1G1P47890 313 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 ANXA11P50995 505 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GPR143P51810 404 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SLC37A1P57057 533 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 NXPH1P58417 271 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 HNRNPKP61978 463 aaKnown RBP eCLIP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GALK2Q01415 458 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GALNT3Q14435 633 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 ZMYND11Q15326 602 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms