RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 FAM221BA6H8Z2 402 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 EPHB6O15197 1021 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 B4GALT4O60513 344 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 TSPAN9O75954 239 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 AP2A2O94973 939 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 PAPSS2O95340 614 aaPredicted RBP7.09□□□□□ -1.28
UPF2-203ENST00000397053 SYNGR4O95473 234 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 C8GP07360 202 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 ARCN1P48444 511 aaKnown RBP7.09□□□□□ -1.28
UPF2-203ENST00000397053 ENPP2Q13822 863 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 C1orf94Q6P1W5 598 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 CLEC17AQ6ZS10 378 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 ABHD13Q7L211 337 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 TBC1D21Q8IYX1 336 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 EPYCQ99645 322 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 DUSP9Q99956 384 aaKnown RBP7.09□□□□□ -1.28
UPF2-203ENST00000397053 SLC25A51Q9H1U9 297 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 LHX5Q9H2C1 402 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 GKN1Q9NS71 199 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 TAS2R14Q9NYV8 317 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 RCOR3Q9P2K3 495 aaPredicted RBP7.09□□□□□ -1.28
UPF2-203ENST00000397053 ERVK-18Q9QC07 812 aa7.09□□□□□ -1.28
UPF2-203ENST00000397053 ILVBLA1L0T0 632 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 MEIS2O14770 477 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NUAK1O60285 661 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CPNE3O75131 537 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 MTHFRP42898 656 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CLCNKAP51800 687 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ECT2LQ008S8 904 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ZNF844Q08AG5 666 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 GLYATQ6IB77 296 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 RAB11FIP2Q7L804 512 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 LDB1Q86U70 411 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 LAPTM4BQ86VI4 370 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 DEFB119Q8N690 84 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 KCNJ9Q92806 393 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NINJ1Q92982 152 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TCEAL3Q969E4 200 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PPP1R14BQ96C90 147 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CTPS2Q9NRF8 586 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 DNMT3AQ9Y6K1 912 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 RGS10O43665 173 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 VEGFDO43915 354 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PCDHGA12O60330 932 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PIAS1O75925 651 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ESR1P03372 595 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ADH5P11766 374 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 DNAJA1P31689 397 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 MAP3K8P41279 467 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CASP5P51878 434 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 BDH1Q02338 343 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 MRPL49Q13405 166 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 RGS21Q2M5E4 152 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CARD16Q5EG05 197 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 IQCHQ86VS3 1027 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 C12orf40Q86WS4 652 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TMEM17Q86X19 198 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CIR1Q86X95 450 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 CELF5Q8N6W0 485 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 SIDT2Q8NBJ9 832 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 PDPRQ8NCN5 879 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 OR5M3Q8NGP4 307 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 LENG1Q96BZ8 264 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 HMCESQ96FZ2 354 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ANKRD27Q96NW4 1050 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 HBEGFQ99075 208 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 HOPXQ9BPY8 73 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 UCK2Q9BZX2 261 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ACSS3Q9H6R3 686 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 KCNMB3Q9NPA1 279 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ITM2CQ9NQX7 267 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 UPB1Q9UBR1 384 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 FKBPLQ9UIM3 349 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 FBXO9Q9UK97 447 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 HCN2Q9UL51 889 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ELOVL7A1L3X0 281 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ZNF878C9JN71 531 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 SCDO00767 359 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PLD2O14939 933 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ADAMDEC1O15204 470 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TPST2O60704 377 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 B4GALT2O60909 372 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 NADKO95544 446 aaPredicted RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 CYP1A2P05177 515 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PRPS2P11908 318 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 GRK5P34947 590 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PRKCIP41743 596 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 KHKP50053 298 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CRISP3P54108 245 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 CTBP2P56545 445 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PTF1AQ7RTS3 328 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 ZNF101Q8IZC7 436 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 JOSD2Q8TAC2 188 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 PIWIL1Q96J94 861 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 Q9N2J8 555 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 TMLHEQ9NVH6 421 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 SRRDQ9UH36 339 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 DKKL1Q9UK85 242 aa7.08□□□□□ -1.28
UPF2-203ENST00000397053 RUVBL1Q9Y265 456 aaKnown RBP7.08□□□□□ -1.28
UPF2-203ENST00000397053 MEMO1Q9Y316 297 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms