RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CFAP36Q96G28 342 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 FERD3LQ96RJ6 166 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 RAB33BQ9H082 229 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 IARS2Q9NSE4 1012 aaKnown RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 AKAP7Q9P0M2 348 aaPredicted RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 FBXO5Q9UKT4 447 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 LOXL2Q9Y4K0 774 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 PLD2O14939 933 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 EIF3HO15372 352 aaKnown RBP eCLIP21.16■□□□□ 0.98
CLN3-207ENST00000395653 BRINP1O60477 761 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 SLCO2B1O94956 709 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 C9P02748 559 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 ERVK-10P10266 1014 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 MPSTP25325 297 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 FRG1Q14331 258 aaKnown RBP21.16■□□□□ 0.98
CLN3-207ENST00000395653 C16orf72Q14CZ0 275 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 OTOAQ7RTW8 1153 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 CNTN4Q8IWV2 1026 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 FBXO39Q8N4B4 442 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 RCBTB1Q8NDN9 531 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 FBXO36Q8NEA4 188 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 PRR11Q96HE9 360 aaPredicted RBP21.16■□□□□ 0.98
CLN3-207ENST00000395653 LRRC1Q9BTT6 524 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 PHACTR1Q9C0D0 580 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 FBXO6Q9NRD1 293 aaPredicted RBP21.16■□□□□ 0.98
CLN3-207ENST00000395653 EPHA6Q9UF33 1036 aa21.16■□□□□ 0.98
CLN3-207ENST00000395653 CTAGE15A4D2H0 777 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 NIPSNAP2O75323 286 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 CTAGE8P0CG41 777 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 LEPRP48357 1165 aaKnown RBP21.15■□□□□ 0.98
CLN3-207ENST00000395653 CSE1LP55060 971 aaKnown RBP21.15■□□□□ 0.98
CLN3-207ENST00000395653 FASTKD3Q14CZ7 662 aaKnown RBP21.15■□□□□ 0.98
CLN3-207ENST00000395653 PLEKHS1Q5SXH7 462 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 KIAA0408Q6ZU52 694 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 ARHGAP22Q7Z5H3 698 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 CTAGE6Q86UF2 777 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 ANKMY2Q8IV38 441 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 CTAGE4Q8IX94 777 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 ZBED8Q8IZ13 594 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 C2CD4AQ8NCU7 369 aaPredicted RBP21.15■□□□□ 0.98
CLN3-207ENST00000395653 ASF1AQ9Y294 204 aa21.15■□□□□ 0.98
CLN3-207ENST00000395653 ANKRD34CP0C6C1 535 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 RBMS1P29558 406 aaKnown RBP21.14■□□□□ 0.98
CLN3-207ENST00000395653 PLTPP55058 493 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 GFERP55789 205 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 MPP1Q00013 466 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 PROSER1Q86XN7 944 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 VRK3Q8IV63 474 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 TBC1D21Q8IYX1 336 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 AGBL5Q8NDL9 886 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 PHC3Q8NDX5 983 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 JPH3Q8WXH2 748 aaPredicted RBP21.14■□□□□ 0.98
CLN3-207ENST00000395653 SEC14L1Q92503 715 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 SLC46A1Q96NT5 459 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 CCDC68Q9H2F9 335 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 TFB2MQ9H5Q4 396 aaKnown RBP21.14■□□□□ 0.98
CLN3-207ENST00000395653 ASCL3Q9NQ33 180 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 LATS2Q9NRM7 1088 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 COMMD10Q9Y6G5 202 aa21.14■□□□□ 0.98
CLN3-207ENST00000395653 PMS2P1A4D2B8 440 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 OR5K3A6NET4 321 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 E5RI56 91 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 TOX3O15405 576 aaPredicted RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 CAPN5O15484 640 aaPredicted RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 ITGA2BP08514 1039 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 F7P08709 466 aaPredicted RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 JMJD7P0C870 316 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 CHRM3P20309 590 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 CSTF2P33240 577 aaKnown RBP eCLIP21.13■□□□□ 0.97
CLN3-207ENST00000395653 SLC7A5Q01650 507 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 FOXR1Q6PIV2 292 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 GALNT7Q86SF2 657 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 OOSP2Q86WS3 158 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 OR52E1Q8NGJ3 308 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 OR5K2Q8NHB8 316 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 GSDMBQ8TAX9 411 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 FBXO25Q8TCJ0 367 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 KCNJ9Q92806 393 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 ZDHHC12Q96GR4 267 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 C9orf72Q96LT7 481 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 ZNF578Q96N58 590 aaPredicted RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 TRIT1Q9H3H1 467 aaKnown RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 POLG2Q9UHN1 485 aa21.13■□□□□ 0.97
CLN3-207ENST00000395653 MAP1BP46821 2468 aaKnown RBP21.13■□□□□ 0.97
CLN3-207ENST00000395653 HAUS5O94927 633 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 TNFSF15O95150 251 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 HGFP14210 728 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 CARSP49589 748 aaKnown RBP21.12■□□□□ 0.97
CLN3-207ENST00000395653 ERVPABLB-1P60509 514 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 GBX1Q14549 363 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 TRADDQ15628 312 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 TBC1D25Q3MII6 688 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 SNAP47Q5SQN1 464 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 TEDDM1Q5T9Z0 273 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 TRMT10BQ6PF06 316 aaKnown RBP21.12■□□□□ 0.97
CLN3-207ENST00000395653 ZDHHC24Q6UX98 284 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 UNC5DQ6UXZ4 953 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 CEP112Q8N8E3 955 aa21.12■□□□□ 0.97
CLN3-207ENST00000395653 NOA1Q8NC60 698 aaKnown RBP21.12■□□□□ 0.97
CLN3-207ENST00000395653 OR5AR1Q8NGP9 310 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms