RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 BUD23O43709 281 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 VEGFDO43915 354 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PCDHGA12O60330 932 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 NPHS1O60500 1241 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PEX11AO75192 247 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ENTPD5O75356 428 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SRP72O76094 671 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 SNUPNO95149 360 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 WISP3O95389 354 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 SOD1P00441 154 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 LTA4HP09960 611 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 CCDC166P0CW27 439 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 EZRP15311 586 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 NME1P15531 152 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 ENGP17813 658 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PGM1P36871 562 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SERPINB5P36952 375 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC26A3P40879 764 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CCR10P46092 362 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CDKN2DP55273 166 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 DNAJB13P59910 316 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PTPRCAPQ14761 206 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 HLA-BQ31612 363 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 DNAL1Q4LDG9 190 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC9B1Q4ZJI4 515 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 TECRLQ5HYJ1 363 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 FAM45BPQ6NSW5 357 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SNX20Q7Z614 316 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 HEATR4Q86WZ0 1026 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PHYKPLQ8IUZ5 450 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC22A18ASQ8N1D0 253 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 OR13C4Q8NGS5 318 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 FAM45AQ8TCE6 357 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 GLYATL1Q969I3 302 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 FUBP1Q96AE4 644 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 SCARF2Q96GP6 870 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 CDKN2AIPNLQ96HQ2 116 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ZNF514Q96K75 400 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 SMIM14Q96QK8 99 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 C1orf21Q9H246 121 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 RNPEPL1Q9HAU8 725 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 TRIM39Q9HCM9 518 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CATSPERZQ9NTU4 200 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 NCKIPSDQ9NZQ3 722 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC17A4Q9Y2C5 497 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CSNK1G3Q9Y6M4 447 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC30A1Q9Y6M5 507 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 A0A1B0GTQ1 180 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 NEMP2A6NFY4 417 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 F8W8V4 182 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLCO1B7G3V0H7 640 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 H0Y8X5 98 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PFDN6O15212 129 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 KCNJ13O60928 360 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLC25A14O95258 325 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 RBP1P09455 135 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 NCF2P19878 526 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 ITGALP20701 1170 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 OGNP20774 298 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 NFATC2Q13469 925 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 FZD2Q14332 565 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ACAP2Q15057 778 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 AARS2Q5JTZ9 985 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 METTL21CQ5VZV1 264 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 DBX2Q6ZNG2 339 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PIWIL4Q7Z3Z4 852 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 LSMEM2Q8N112 164 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CCNYL1Q8N7R7 359 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PLA2G15Q8NCC3 412 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 DDHD1Q8NEL9 900 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 OR56A4Q8NGH8 313 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 OR4L1Q8NH43 312 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 MAPK15Q8TD08 544 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ANKRD49Q8WVL7 239 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 STON2Q8WXE9 905 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS53-202ENST00000389040 CCDC126Q96EE4 140 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SGF29Q96ES7 293 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PHOX2BQ99453 314 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 TMEM9BQ9NQ34 198 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 TCF7L2Q9NQB0 619 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 NOP53Q9NZM5 478 aaKnown RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 VTI1BQ9UEU0 232 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ZDHHC2Q9UIJ5 367 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 CORO1CQ9ULV4 474 aaPredicted RBP10.01□□□□□ -0.81
VPS53-202ENST00000389040 CRYL1Q9Y2S2 319 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 OR1A2Q9Y585 309 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SNX11Q9Y5W9 270 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 SLCO1B1Q9Y6L6 691 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 ABCA7Q8IZY2 2146 aa10.01□□□□□ -0.81
VPS53-202ENST00000389040 PATE3B3GLJ2 98 aa10□□□□□ -0.81
VPS53-202ENST00000389040 E9PBE3 544 aa10□□□□□ -0.81
VPS53-202ENST00000389040 K7ESM1 405 aa10□□□□□ -0.81
VPS53-202ENST00000389040 KLHL41O60662 606 aa10□□□□□ -0.81
VPS53-202ENST00000389040 RASGRP1O95267 797 aa10□□□□□ -0.81
VPS53-202ENST00000389040 PRAMEF1O95521 474 aa10□□□□□ -0.81
VPS53-202ENST00000389040 GSTM1P09488 218 aa10□□□□□ -0.81
VPS53-202ENST00000389040 TFEBP19484 476 aa10□□□□□ -0.81
VPS53-202ENST00000389040 FDXRP22570 491 aa10□□□□□ -0.81
VPS53-202ENST00000389040 CCT8P50990 548 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms