RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 WDR47O94967 919 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 CHRM1P11229 460 aaPredicted RBP21.14■□□□□ 0.97
TRIM54-202ENST00000380075 ITGB6P18564 788 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 FSHRP23945 695 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 EEFSECP57772 596 aaKnown RBP21.14■□□□□ 0.97
TRIM54-202ENST00000380075 UFM1P61960 85 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 DMC1Q14565 340 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 FUT11Q495W5 492 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 LRRC66Q68CR7 880 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 TSPAN33Q86UF1 283 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 ZFAND4Q86XD8 727 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 SFRP1Q8N474 314 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 LEMD2Q8NC56 503 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 GPR26Q8NDV2 337 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 ING5Q8WYH8 240 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 TMEM125Q96AQ2 219 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 VOPP1Q96AW1 172 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 CCDC97Q96F63 343 aaPredicted RBP21.14■□□□□ 0.97
TRIM54-202ENST00000380075 NECTIN4Q96NY8 510 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 CDK15Q96Q40 435 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 EGFL8Q99944 293 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 WWOXQ9NZC7 414 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 OPTCQ9UBM4 332 aa21.14■□□□□ 0.97
TRIM54-202ENST00000380075 C2orf16Q68DN1 1984 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 SOBPA7XYQ1 873 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 TAPBPO15533 448 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 ZNF26P17031 533 aaPredicted RBP21.13■□□□□ 0.97
TRIM54-202ENST00000380075 GRIA3P42263 894 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 STK19P49842 368 aaPredicted RBP21.13■□□□□ 0.97
TRIM54-202ENST00000380075 MAD2L1Q13257 205 aaPredicted RBP21.13■□□□□ 0.97
TRIM54-202ENST00000380075 SCIMPQ6UWF3 145 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 PLPP6Q8IY26 295 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 DPP10Q8N608 796 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 LRTOMTQ8WZ04 291 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 RHBDF1Q96CC6 855 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 TEX37Q96LM6 180 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 COPS8Q99627 209 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 CENPKQ9BS16 269 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 CNOT6Q9ULM6 557 aaKnown RBP21.13■□□□□ 0.97
TRIM54-202ENST00000380075 SUFUQ9UMX1 484 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 VCANP13611 3396 aa21.13■□□□□ 0.97
TRIM54-202ENST00000380075 K7EPI3 171 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ZNF197O14709 1029 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 LSM1O15116 133 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 HNRNPRO43390 633 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ATP6V1B2P21281 511 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 CTSOP43234 321 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 HSPA7P48741 367 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 CCNHP51946 323 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 CAPRIN1Q14444 709 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 GET4Q7L5D6 327 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 PTRH1Q86Y79 214 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ANKFN1Q8N957 763 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 PROKR1Q8TCW9 393 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 C1orf50Q9BV19 199 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 NTMT1Q9BV86 223 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ELOVL2Q9NXB9 296 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 TRPS1Q9UHF7 1281 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 SNX13Q9Y5W8 968 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 IGLV3-16A0A075B6K0 115 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ASPDHA6ND91 283 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 SLC28A1O00337 649 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 BMP2P12643 396 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 CEBPBP17676 345 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 POLR2LP62875 67 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 NR6A1Q15406 480 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 TEAD2Q15562 447 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 SMAD2Q15796 467 aaKnown RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 AASDHQ4L235 1098 aaPredicted RBP21.12■□□□□ 0.97
TRIM54-202ENST00000380075 RNF220Q5VTB9 566 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ERMP1Q7Z2K6 904 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 ZNF597Q96LX8 424 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 NOTCH4Q99466 2003 aa21.12■□□□□ 0.97
TRIM54-202ENST00000380075 KANSL1LA0AUZ9 987 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 ZNF839A8K0R7 811 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 C9JVG2 144 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 ARNTLO00327 626 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 RGS14O43566 566 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 GUCA1CO95843 209 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 GPIP06744 558 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 OR56A5P0C7T3 313 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 EBLN1P0CF75 366 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 PABPC1P11940 636 aaKnown RBP21.11■□□□□ 0.97
TRIM54-202ENST00000380075 IL9P15248 144 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 IL10P22301 178 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 PSMA4P25789 261 aaKnown RBP21.11■□□□□ 0.97
TRIM54-202ENST00000380075 HTR6P50406 440 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 C18orf21Q32NC0 220 aaPredicted RBP21.11■□□□□ 0.97
TRIM54-202ENST00000380075 ARHGAP15Q53QZ3 475 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 AHI1Q8N157 1196 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 DCBLD1Q8N8Z6 715 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 CANT1Q8WVQ1 401 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 VPS33AQ96AX1 596 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 SLC45A3Q96JT2 553 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 TMEM79Q9BSE2 394 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 ALG2Q9H553 416 aa21.11■□□□□ 0.97
TRIM54-202ENST00000380075 TSR3Q9UJK0 312 aaKnown RBP21.11■□□□□ 0.97
TRIM54-202ENST00000380075 HELZP42694 1942 aaKnown RBP21.11■□□□□ 0.97
TRIM54-202ENST00000380075 DHRS12A0PJE2 317 aa21.1■□□□□ 0.97
TRIM54-202ENST00000380075 WASH3PC4AMC7 463 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms