RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TRAPPC12Q8WVT3 735 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 HIST1H2AAQ96QV6 131 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 OR11A1Q9GZK7 315 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 FAM49AQ9H0Q0 323 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 ZNF804BA4D1E1 1349 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 ERBB3P21860 1342 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 XDHP47989 1333 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PRAMEF12O95522 483 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 CYP2E1P05181 493 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 CMPK1P30085 196 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 HERVK_113P63132 956 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PPP3CAQ08209 521 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 EPHA7Q15375 998 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 CPTPQ5TA50 214 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SGMS1Q86VZ5 419 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 UNC5BQ8IZJ1 945 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 OR1J4Q8NGS1 313 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TTYH2Q9BSA4 534 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TMEM121BQ9BXQ6 578 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 DDIT4Q9NX09 232 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 UXTQ9UBK9 157 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 CDC7O00311 574 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TPT1P13693 172 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 SLC16A2P36021 539 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 KLK7P49862 253 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TGFBIQ15582 683 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SLC5A7Q9GZV3 580 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 FN3KRPQ9HA64 309 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 LAMP5Q9UJQ1 280 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PRR5-ARHGAP8B1AHC4 643 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PAPSS1O43252 624 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 PIP5K1CO60331 668 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PABPC4LP0CB38 370 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 HERV-K104P61576 105 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 ERVK-9P63128 1117 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 ARHGAP8P85298 464 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 NPTX1Q15818 432 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TRIM46Q7Z4K8 759 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 DCP1BQ8IZD4 617 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 TMEM199Q8N511 208 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 IQCF1Q8N6M8 205 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SUMF2Q8NBJ7 301 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 KATNBL1Q9H079 304 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 HIPK2Q9H2X6 1198 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 DPEP2Q9H4A9 486 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SRRDQ9UH36 339 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 RIMKLBQ9ULI2 386 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 APOA2P02652 100 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 NAT1P18440 290 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 MGAT1P26572 445 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SLC1A3P43003 542 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 FLI1Q01543 452 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 NFE2Q16621 373 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 SUPT20HL1Q3ZLR7 823 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 XKR4Q5GH76 650 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 SPIN3Q5JUX0 258 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 ANGEL2Q5VTE6 544 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 PDSS2Q86YH6 399 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TSEN2Q8NCE0 465 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 DCAKDQ8WVC6 231 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 STON2Q8WXE9 905 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 ATP13A3Q9H7F0 1226 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 COQ10BQ9H8M1 238 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 MKS1Q9NXB0 559 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 DNAJB9Q9UBS3 223 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 PLA2G4CQ9UP65 541 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TEX13DA0A0J9YY54 714 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 DAPL1A0PJW8 107 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 OR10H2O60403 315 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 NME6O75414 186 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 PCCAP05165 728 aaPredicted RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 TCEA1P23193 301 aaKnown RBP8.62□□□□□ -1.03
LIG3-202ENST00000378526 ATP6V0D1P61421 351 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 GCNT6Q5T4J0 391 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 DPY19L4Q7Z388 723 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 C7orf34Q96L11 122 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 RDH12Q96NR8 316 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 TMEM39BQ9GZU3 492 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 DUSP10Q9Y6W6 482 aa8.62□□□□□ -1.03
LIG3-202ENST00000378526 A8MUI8 341 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 AZIN1O14977 448 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 RNF4P78317 190 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 HSDL2Q6YN16 418 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 RHOUQ7L0Q8 258 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 DCP2Q8IU60 420 aaKnown RBP8.61□□□□□ -1.03
LIG3-202ENST00000378526 OR10T2Q8NGX3 314 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 SNX27Q96L92 541 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 SGIP1Q9BQI5 828 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 NDC1Q9BTX1 674 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 TMEM27Q9HBJ8 222 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 PTTG3PQ9NZH4 202 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 KDM5BQ9UGL1 1544 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 A0A1W2PRQ8 180 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 ADAMTS3O15072 1205 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 LILRB5O75023 590 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 RNASEH2AO75792 299 aaKnown RBP8.61□□□□□ -1.03
LIG3-202ENST00000378526 ALPPP05187 535 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 PRKCHP24723 683 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 CTHP32929 405 aa8.61□□□□□ -1.03
LIG3-202ENST00000378526 CRISP1P54107 249 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms