RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 KXD1Q9BQD3 176 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 COMMD4Q9H0A8 199 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 C5orf60A6NFR6 353 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 MAGEB17A8MXT2 336 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 GADD45GO95257 159 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 NDST3O95803 873 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 SLC6A9P48067 706 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 IDH3AP50213 366 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 CLCN7P51798 805 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 FSTL4Q6MZW2 842 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 SLC38A4Q969I6 547 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TRIM2Q9C040 744 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 MTRRQ9UBK8 725 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TCAF1Q9Y4C2 921 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 INSIG1O15503 277 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 OR1I1O60431 355 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 RPP14O95059 124 aaKnown RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 FAM174BQ3ZCQ3 159 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 DNAJA3Q96EY1 480 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 PDZD7Q9H5P4 517 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 SMPD3Q9NY59 655 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 IRGMA1A4Y4 181 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 B4DGG1 531 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 EIF1AYO14602 144 aaKnown RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 KMOO15229 486 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TSHRP16473 764 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 RNF144AP50876 292 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 OLR1P78380 273 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 C2orf27AQ580R0 203 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 AUTS2Q8WXX7 1259 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TMEM203Q969S6 136 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TTYH1Q9H313 450 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 DNAJC28Q9NX36 388 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 SMIM30A4D0T7 59 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TRIM64A6NGJ6 449 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 NAA20P61599 178 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 AAGABQ6PD74 315 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 AMIGO1Q86WK6 493 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 LRRC52Q8N7C0 313 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 LRCH4O75427 683 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CCNE2O96020 404 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CES1P23141 567 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TIE1P35590 1138 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 AQP4P55087 323 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 GNA12Q03113 381 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 INTS6LQ5JSJ4 861 aaKnown RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ZDHHC20Q5W0Z9 365 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 FRMD7Q6ZUT3 714 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ASB18Q6ZVZ8 466 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 SETBP1Q9Y6X0 1596 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 LRRIQ1Q96JM4 1722 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CXCR6O00574 342 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CILPO75339 1184 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CPN2P22792 545 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 C1QTNF8P60827 252 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 LAPTM4BQ86VI4 370 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 MKL1Q969V6 931 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 SLC35G5Q96KT7 338 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 NUDT4Q9NZJ9 180 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 BTNL10A8MVZ5 291 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 GDF10P55107 478 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 NFATC2Q13469 925 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 SGCBQ16585 318 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 STRADAQ7RTN6 431 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CYP2U1Q7Z449 544 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 RANBP3LQ86VV4 465 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ZDHHC21Q8IVQ6 265 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TTTY10Q9BZA0 68 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TCF7L1Q9HCS4 588 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 KDM4BO94953 1096 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ACVR2AP27037 513 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 GRK6P43250 576 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 SP2Q02086 613 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 CYB5D2Q8WUJ1 264 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TIFAQ96CG3 184 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TIMM8BQ9Y5J9 83 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 PER2O15055 1255 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TSPAN1O60635 241 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 PLGP00747 810 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ASMTP46597 345 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 ARCN1P48444 511 aaKnown RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 GPR68Q15743 365 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 P2RY8Q86VZ1 359 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 OR10Q1Q8NGQ4 319 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 HIST1H2AAQ96QV6 131 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 IL12RB2Q99665 862 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 MRPS30Q9NP92 439 aaKnown RBP13.5□□□□□ -0.25
COL4A1-201ENST00000375820 GRHL1Q9NZI5 618 aa13.5□□□□□ -0.25
COL4A1-201ENST00000375820 TGFB1P01137 390 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 C4BPAP04003 597 aaKnown RBP13.49□□□□□ -0.25
COL4A1-201ENST00000375820 AP1S2P56377 157 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 ELP6Q0PNE2 266 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 C11orf65Q8NCR3 313 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 SCAMP5Q8TAC9 235 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 HM13Q8TCT9 377 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 HSD17B14Q9BPX1 270 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 TTYH2Q9BSA4 534 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 ZSCAN5AQ9BUG6 496 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 ADAP2Q9NPF8 381 aa13.49□□□□□ -0.25
COL4A1-201ENST00000375820 CENPMQ9NSP4 180 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms