RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GLMNQ92990 594 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 LGR4Q9BXB1 951 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 UBE2ZQ9H832 354 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 IPPKQ9H8X2 491 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 MBNL1Q9NR56 388 aaKnown RBP13.49□□□□□ -0.25
PTPRF-202ENST00000372405 POLG2Q9UHN1 485 aa13.49□□□□□ -0.25
PTPRF-202ENST00000372405 SLC16A5O15375 505 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 PCCBP05166 539 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 ANXA5P08758 320 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 GSTM1P09488 218 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 GGT5P36269 586 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 GSTM4Q03013 218 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 GRB7Q14451 532 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 AGERQ15109 404 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 E2F5Q15329 346 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 CCDC85BQ15834 202 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-202ENST00000372405 XKR7Q5GH72 579 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.48□□□□□ -0.25
PTPRF-202ENST00000372405 CDKL4Q5MAI5 379 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 HEATR4Q86WZ0 1026 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 DDIASQ8IXT1 998 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 FAM13CQ8NE31 585 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 KCNV2Q8TDN2 545 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 DNASE1L2Q92874 299 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 CMTM5Q96DZ9 223 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 HIC2Q96JB3 615 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 RAB3IPQ96QF0 476 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-202ENST00000372405 NUSAP1Q9BXS6 441 aaKnown RBP13.48□□□□□ -0.25
PTPRF-202ENST00000372405 FBXL12Q9NXK8 326 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 OPTCQ9UBM4 332 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 TMEM98Q9Y2Y6 226 aa13.48□□□□□ -0.25
PTPRF-202ENST00000372405 ARHGEF33A8MVX0 844 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 K7EPI3 171 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 UBDO15205 165 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SLC22A2O15244 555 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 PSIP1O75475 530 aaKnown RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 CAPN1P07384 714 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 DRD1P21728 446 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SLC25A3Q00325 362 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 ABRQ12979 859 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 STARD3Q14849 445 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SYTL3Q4VX76 610 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SCIMPQ6UWF3 145 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 C11orf96Q7Z7L8 435 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SNX32Q86XE0 403 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 TRAPPC5Q8IUR0 188 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SLC22A15Q8IZD6 547 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SNX31Q8N9S9 440 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 OR2T11Q8NH01 316 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 KLK6Q92876 244 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 TMEM159Q96B96 161 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 LRCH3Q96II8 777 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 ZCCHC2Q9C0B9 1178 aaKnown RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 C1orf21Q9H246 121 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 C8orf33Q9H7E9 229 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.47□□□□□ -0.256e-7■□□□□ 10.2
PTPRF-202ENST00000372405 PLRG1O43660 514 aaKnown RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 KATNA1O75449 491 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 CRCPO75575 148 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 STK16O75716 305 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 PRR35P0CG20 571 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 ADSLP30566 484 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SLC6A12P48065 614 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 HTR6P50406 440 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 CDK3Q00526 305 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 GRSF1Q12849 480 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 PTK2BQ14289 1009 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 CCSMST1Q4G0I0 132 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 SDE2Q6IQ49 451 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 METTL2BQ6P1Q9 378 aaKnown RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 LINC00615Q96LM1 132 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 GAS2L1Q99501 681 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-202ENST00000372405 OSBPL6Q9BZF3 934 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 CD93Q9NPY3 652 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 PRKAB1Q9Y478 270 aa13.47□□□□□ -0.25
PTPRF-202ENST00000372405 A0A1W2PPC1 479 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 VEGFDO43915 354 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 PAK4O96013 591 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-202ENST00000372405 OTCP00480 354 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 CYP2A7P20853 494 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 CCNG1P51959 295 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 ADPRHP54922 357 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 IRF4Q15306 451 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 TMEM259Q4ZIN3 620 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 CRTC3Q6UUV7 619 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 PACS2Q86VP3 889 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 CFAP206Q8IYR0 622 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 TP53I13Q8NBR0 393 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-202ENST00000372405 OR14C36Q8NHC7 312 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 CFAP61Q8NHU2 1237 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 PYCR2Q96C36 320 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 PHF7Q9BWX1 381 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-202ENST00000372405 C1QTNF2Q9BXJ5 285 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 RASSF4Q9H2L5 321 aa13.46□□□□□ -0.25
PTPRF-202ENST00000372405 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.46□□□□□ -0.25
PTPRF-202ENST00000372405 PRR23AA6NEV1 266 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 GIPC1O14908 333 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CHUKO15111 745 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 POP7O75817 140 aaKnown RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 DNTTP04053 509 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms