RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 DHRS12A0PJE2 317 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 FGFR3P22607 806 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 POLR2JP52435 117 aaKnown RBP11.4□□□□□ -0.58
SYNE1-204ENST00000367248 MYBPC1Q00872 1141 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 KLHL12Q53G59 568 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 PDE12Q6L8Q7 609 aaKnown RBP11.4□□□□□ -0.58
SYNE1-204ENST00000367248 ZNF572Q7Z3I7 529 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-204ENST00000367248 C8orf59Q8N0T1 100 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-204ENST00000367248 UMODL1-AS1Q8N2C9 162 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 NPAS2Q99743 824 aa11.4□□□□□ -0.58
SYNE1-204ENST00000367248 PAPOLBQ9NRJ5 636 aaKnown RBP11.4□□□□□ -0.58
SYNE1-204ENST00000367248 ATXN2Q99700 1313 aaKnown RBP11.4□□□□□ -0.59
SYNE1-204ENST00000367248 ZNF840PA6NDX5 716 aa11.4□□□□□ -0.59
SYNE1-204ENST00000367248 NPHS1O60500 1241 aa11.4□□□□□ -0.59
SYNE1-204ENST00000367248 SOX6P35712 828 aa11.4□□□□□ -0.59
SYNE1-204ENST00000367248 PTSQ03393 145 aa11.4□□□□□ -0.59
SYNE1-204ENST00000367248 PRAMEF14Q5SWL7 426 aa11.4□□□□□ -0.59
SYNE1-204ENST00000367248 MUSKO15146 869 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 BEST1O76090 585 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 CLDN7O95471 211 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 RB1P06400 928 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TCEAL1Q15170 157 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 APLFQ8IW19 511 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 PYCR2Q96C36 320 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 VPS35Q96QK1 796 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ZNF184Q99676 751 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 EFCAB11Q9BUY7 163 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 MRTO4Q9UKD2 239 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 PHRF1Q9P1Y6 1649 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 PTGES3LE9PB15 166 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TRAPPC6AO75865 159 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 PCBP2Q15366 365 aaKnown RBP eCLIP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 DDI2Q5TDH0 399 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 VWA5B1Q5TIE3 1220 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ERICH5Q6P6B1 374 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 USP53Q70EK8 1073 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KRT77Q7Z794 578 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ULK2Q8IYT8 1036 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 NEK7Q8TDX7 302 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 HIC2Q96JB3 615 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 C1orf109Q9NX04 203 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 SAMHD1Q9Y3Z3 626 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 C2orf78A6NCI8 922 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TNFAIP8O95379 198 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 CDC73Q6P1J9 531 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TMEM126BQ8IUX1 230 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 GALNT8Q9NY28 637 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ARHGEF9O43307 516 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 OR10H3O60404 316 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 NBNO60934 754 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 JUPP14923 745 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 HSD17B2P37059 387 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 CACNA2D1P54289 1103 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 STXBP1P61764 594 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 SLC8B1Q6J4K2 584 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 GPRIN1Q7Z2K8 1008 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 NAT14Q8WUY8 206 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KIAA1143Q96AT1 154 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 CDADC1Q9BWV3 514 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 LDAHQ9H6V9 325 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 RC3H2Q9HBD1 1191 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TRPS1Q9UHF7 1281 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KCTD3Q9Y597 815 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KRT36O76013 467 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 HOXB6P17509 224 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 STK19P49842 368 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ATP12AP54707 1039 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 AP1S2P56377 157 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ZNF852Q6ZMS4 543 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 SMYD1Q8NB12 490 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KBTBD7Q8WVZ9 684 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 KAT2AQ92830 837 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 EGFL7Q9UHF1 273 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 TGM5O43548 720 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 EPOP01588 193 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 ELOAQ14241 798 aaKnown RBP11.39□□□□□ -0.59
SYNE1-204ENST00000367248 GKN2Q86XP6 184 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 MR1Q95460 341 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 HERC2P3Q9BVR0 1158 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 SPHK2Q9NRA0 654 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 MAP4K5Q9Y4K4 846 aa11.39□□□□□ -0.59
SYNE1-204ENST00000367248 A6NCN8 305 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 K7EPI3 171 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 ASGR2P07307 311 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 RAB33AQ14088 237 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 VPS26BQ4G0F5 336 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 P4HA3Q7Z4N8 544 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 LRRTM4Q86VH4 590 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 LNX2Q8N448 690 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.38□□□□□ -0.59
SYNE1-204ENST00000367248 IL21RQ9HBE5 538 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 SLC2A6Q9UGQ3 507 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 PIP5K1BO14986 540 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 TCEA3O75764 348 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 NRF1Q16656 503 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 ZNF781Q8N8C0 355 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 MTERF3Q96E29 417 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 RNFT2Q96EX2 444 aa11.38□□□□□ -0.59
SYNE1-204ENST00000367248 TSGA13Q96PP4 275 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms