RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PPP4R1Q8TF05 950 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 RAPGEF5Q92565 580 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 N4BP2L2Q92802 583 aaPredicted RBP13.42□□□□□ -0.26
VPS29-201ENST00000360579 NACC2Q96BF6 587 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 PTERQ96BW5 349 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 LINC00615Q96LM1 132 aaPredicted RBP13.42□□□□□ -0.26
VPS29-201ENST00000360579 TEKT5Q96M29 485 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 OLFM3Q96PB7 478 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 LMBRD1Q9NUN5 540 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 CTTNBP2NLQ9P2B4 639 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 NDOR1Q9UHB4 597 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 OSGIN2Q9Y236 505 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 NTNG1Q9Y2I2 539 aa13.42□□□□□ -0.26
VPS29-201ENST00000360579 PTRH2Q9Y3E5 179 aaKnown RBP13.42□□□□□ -0.26
VPS29-201ENST00000360579 A0A087X0T9 212 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 A0A1B0GUH1 482 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 LRRD1A4D1F6 860 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 SMTNL1A8MU46 457 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 C2orf74A8MZ97 194 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 GPR39O43194 453 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 FAM228BP0C875 321 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 PRF1P14222 555 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 HNRNPH3P31942 346 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 WNT3AP56704 352 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 DCDP81605 110 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 AIMP2Q13155 320 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 SIRPB2Q5JXA9 342 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 SP5Q6BEB4 398 aaPredicted RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 RHBDD2Q6NTF9 364 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 BZW1Q7L1Q6 419 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 DET1Q7L5Y6 550 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 HOOK3Q86VS8 718 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 MCEMP1Q8IX19 187 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 CFAP206Q8IYR0 622 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 ZNF398Q8TD17 642 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 BLOC1S5Q8TDH9 187 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS29-201ENST00000360579 RMDN2Q96LZ7 410 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 TRAPPC9Q96Q05 1148 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 AP1M1Q9BXS5 423 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 UNKQ9C0B0 810 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 TFB2MQ9H5Q4 396 aaKnown RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 UBP1Q9NZI7 540 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 IFT80Q9P2H3 777 aaPredicted RBP13.41□□□□□ -0.26
VPS29-201ENST00000360579 FAM8A1Q9UBU6 413 aa13.41□□□□□ -0.26
VPS29-201ENST00000360579 A0A1B0GTH6 734 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 A0A1W2PQJ5 194 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 PRSS44E7EML9 344 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 IFRD1O00458 451 aaPredicted RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 BTN3A1O00481 513 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 STX7O15400 261 aaKnown RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 OR2B3O76000 313 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 PRAMEF1O95521 474 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 POLBP06746 335 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 H2AFZP0C0S5 128 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 RALBP11234 206 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 PTPN3P26045 913 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 TSFMP43897 325 aaKnown RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 IRAK1BP1Q5VVH5 260 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 B3GNTL1Q67FW5 361 aaPredicted RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 SARM1Q6SZW1 724 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 CDHR3Q6ZTQ4 885 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 H2AFVQ71UI9 128 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 CPNE8Q86YQ8 564 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 HM13Q8TCT9 377 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 CTNNBL1Q8WYA6 563 aaPredicted RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 GBP5Q96PP8 586 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 NOVA2Q9UNW9 492 aaKnown RBP13.4□□□□□ -0.26
VPS29-201ENST00000360579 CSMD2Q7Z408 3487 aa13.4□□□□□ -0.26
VPS29-201ENST00000360579 C17orf113A0A1B0GUU1 675 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 CCDC66A2RUB6 948 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 AGPSO00116 658 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 BTN3A3O00478 584 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 E2F3O00716 465 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 GAPDHSO14556 408 aaPredicted RBP13.39□□□□□ -0.27
VPS29-201ENST00000360579 ZG16O60844 167 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 CBSLP0DN79 551 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 CBSP35520 551 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 NOMO1Q15155 1222 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 SLC1A5Q15758 541 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 ODF2Q5BJF6 829 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 FAM182AQ5T1J6 154 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 FCRL6Q6DN72 434 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 ZNF449Q6P9G9 518 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 KDELC1Q6UW63 502 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 CLEC17AQ6ZS10 378 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 PPP1R32Q7Z5V6 425 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 AMIGO1Q86WK6 493 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 SLC25A41Q8N5S1 370 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 GRHL3Q8TE85 626 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 HEXDCQ8WVB3 486 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 FAR1Q8WVX9 515 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 DCUN1D1Q96GG9 259 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 RBM41Q96IZ5 413 aaKnown RBP13.39□□□□□ -0.27
VPS29-201ENST00000360579 FERD3LQ96RJ6 166 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 BPIFA3Q9BQP9 254 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 CHRNA10Q9GZZ6 450 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 MVB12BQ9H7P6 319 aa13.39□□□□□ -0.27
VPS29-201ENST00000360579 ZBTB20Q9HC78 741 aaPredicted RBP13.39□□□□□ -0.27
VPS29-201ENST00000360579 TXLNGQ9NUQ3 528 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms