RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SNX27Q96L92 541 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 PPM1MQ96MI6 270 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 INPP4AQ96PE3 977 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 FAM129BQ96TA1 746 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 EPYCQ99645 322 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GORASP1Q9BQQ3 440 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 C11orf84Q9BUA3 381 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 MECRQ9BV79 373 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 PDZD7Q9H5P4 517 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 MOV10Q9HCE1 1003 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 ANKHQ9HCJ1 492 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 OSER1Q9NX31 292 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 FNIP2Q9P278 1114 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 SLC17A7Q9P2U7 560 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 AASSQ9UDR5 926 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 FETUBQ9UGM5 382 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 CNOT6Q9ULM6 557 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 COL5A2P05997 1499 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 A0A1W2PPM1 405 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 CXCR6O00574 342 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 AIREO43918 545 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 TSPAN1O60635 241 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 LGR5O75473 907 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 KAT7O95251 611 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GOT2P00505 430 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 C4BPAP04003 597 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 GNAZP19086 355 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GBX2P52951 348 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 MTTPP55157 894 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 HSPB3Q12988 150 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 HNRNPDQ14103 355 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 ALG1LQ6GMV1 187 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 VITQ6UXI7 678 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 TDRPQ86YL5 185 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 SDR16C5Q8N3Y7 309 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GSTCDQ8NEC7 633 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 OR5K1Q8NHB7 308 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 C9orf43Q8TAL5 461 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 HPS1Q92902 700 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 CNDP2Q96KP4 475 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 IFT27Q9BW83 186 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 TTYH1Q9H313 450 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 EHD1Q9H4M9 534 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 TFB2MQ9H5Q4 396 aaKnown RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 FAM234BA2RU67 622 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ELOA3DA6NLF2 546 aaPredicted RBP6.37□□□□□ -1.39
UPF2-201ENST00000356352 ZNF726A6NNF4 738 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 SLC38A8A6NNN8 435 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 NUAK1O60285 661 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ZNF3P17036 446 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 AQP1P29972 269 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 HSPA7P48741 367 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 FLT3LGP49771 235 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 CCR8P51685 355 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 CDH12P55289 794 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 DDR1Q08345 913 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 UGCGQ16739 394 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ELOA3BQ3SY89 546 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GPR33Q49SQ1 333 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 TMEM220Q6QAJ8 160 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 USP30Q70CQ3 517 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 NUDT13Q86X67 352 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 KLHL36Q8N4N3 616 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 PLD5Q8N7P1 536 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 VGLL2Q8N8G2 317 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ATP6V1C2Q8NEY4 427 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ELOA3Q8NG57 546 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 GRPEL2Q8TAA5 225 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 THRSPQ92748 146 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 NUS1Q96E22 293 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 FUBP3Q96I24 572 aaKnown RBP eCLIP6.37□□□□□ -1.39
UPF2-201ENST00000356352 DPEP2Q9H4A9 486 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 NMUR1Q9HB89 426 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 ARL8BQ9NVJ2 186 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 MED11Q9P086 117 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 PADI3Q9ULW8 664 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 WASF3Q9UPY6 502 aa6.37□□□□□ -1.39
UPF2-201ENST00000356352 OR1I1O60431 355 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CDC40O60508 579 aaKnown RBP eCLIP6.36□□□□□ -1.39
UPF2-201ENST00000356352 NOS1APO75052 506 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 ANXA8P13928 327 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 IL7RP16871 459 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RORCP51449 518 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CLCN4P51793 760 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 NRG1Q02297 640 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 DSC2Q02487 901 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 NIPAL1Q6NVV3 410 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 CAND1Q86VP6 1230 aaKnown RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 FBXO15Q8NCQ5 510 aaPredicted RBP6.36□□□□□ -1.39
UPF2-201ENST00000356352 KCTD13Q8WZ19 329 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 HMCESQ96FZ2 354 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 FAM210AQ96ND0 272 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 ZNF570Q96NI8 536 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 PCDHB16Q9NRJ7 776 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RNF19AQ9NV58 838 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 IGSF9Q9P2J2 1179 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 LGALS13Q9UHV8 139 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 FZD10Q9ULW2 581 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 U3KQV3 271 aa6.36□□□□□ -1.39
UPF2-201ENST00000356352 RIMS1Q86UR5 1692 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms