RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 KCNK5O95279 499 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 VIPP01282 170 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 ITGA2BP08514 1039 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 GCAP28676 217 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 SKIV2L2P42285 1042 aaKnown RBP21.63■■□□□ 1.05
SHMT1-203ENST00000354098 BIRC2Q13490 618 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 BMPR2Q13873 1038 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 CCDC157Q569K6 752 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 UGT3A1Q6NUS8 523 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 CFAP61Q8NHU2 1237 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 NFS1Q9Y697 457 aa21.63■■□□□ 1.05
SHMT1-203ENST00000354098 RHPN2P1A8MT19 583 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 MSH2P43246 934 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 PDAP1Q13442 181 aaKnown RBP21.62■■□□□ 1.05
SHMT1-203ENST00000354098 USP10Q14694 798 aaKnown RBP21.62■■□□□ 1.05
SHMT1-203ENST00000354098 TTLL9Q3SXZ7 439 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 MROH9Q5TGP6 573 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 TMEM207Q6UWW9 146 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 Q8N9G6 341 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-203ENST00000354098 DCAKDQ8WVC6 231 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 EEF1AKMT1Q8WVE0 214 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 SKA2Q8WVK7 121 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-203ENST00000354098 FERD3LQ96RJ6 166 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 POT1Q9NUX5 634 aa21.62■■□□□ 1.05
SHMT1-203ENST00000354098 PCNX2A6NKB5 2137 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 INHBAP08476 426 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 SIM1P81133 766 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-203ENST00000354098 POU4F1Q01851 419 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 SLCO6A1Q86UG4 719 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 OR6C4Q8NGE1 309 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 OR5AR1Q8NGP9 310 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 NAT6Q93015 286 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 CCDC3Q9BQI4 270 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 ASF1AQ9Y294 204 aa21.61■■□□□ 1.05
SHMT1-203ENST00000354098 CTIFO43310 598 aaKnown RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 GPR18Q14330 331 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 CYHR1Q6ZMK1 362 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 ZNF438Q7Z4V0 828 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 JPH3Q8WXH2 748 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 DHRS4Q9BTZ2 278 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 STN1Q9H668 368 aaKnown RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 EVA1BQ9NVM1 165 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 IKBKGQ9Y6K9 419 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 PHGDHO43175 533 aaKnown RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 KCNA4P22459 653 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 ALDH4A1P30038 563 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 ATP5DP30049 168 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 SLC12A2P55011 1212 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 OR1D5P58170 312 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 ILF2Q12905 390 aaKnown RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 PRKG2Q13237 762 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 KRT33BQ14525 404 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 PIWIL4Q7Z3Z4 852 aaKnown RBP21.6■■□□□ 1.05
SHMT1-203ENST00000354098 CMC1Q7Z7K0 106 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 SLC38A3Q99624 504 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 NRTNQ99748 197 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 TBC1D10AQ9BXI6 508 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 HEBP2Q9Y5Z4 205 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 COLEC10Q9Y6Z7 277 aa21.6■■□□□ 1.05
SHMT1-203ENST00000354098 DCHS1Q96JQ0 3298 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 B4GAT1O43505 415 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 MATN4O95460 622 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 TSPAN12O95859 305 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 FTH1P19P0C7X4 201 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 CBSLP0DN79 551 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 CBSP35520 551 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 TMEM26Q6ZUK4 368 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 MYRIPQ8NFW9 859 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 OR2W6PQ8NHA6 318 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 LINGO1Q96FE5 620 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 HGH1Q9BTY7 390 aa21.59■■□□□ 1.05
SHMT1-203ENST00000354098 GP1BAP07359 652 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 PNLIPP16233 465 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 STMN1P16949 149 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ZNF37AP17032 561 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-203ENST00000354098 GMPRP36959 345 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 NR1D2Q14995 579 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ZKSCAN8Q15776 578 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-203ENST00000354098 MAP9Q49MG5 647 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ADGRD1Q6QNK2 874 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 SPRED1Q7Z699 444 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 MREGQ8N565 214 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 AVL9Q8NBF6 648 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 OR5K2Q8NHB8 316 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ANKRD49Q8WVL7 239 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 SH3KBP1Q96B97 665 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 CCDC77Q9BR77 488 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 KIR3DX1Q9H7L2 352 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 MVB12BQ9H7P6 319 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 GPAMQ9HCL2 828 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 CIDEBQ9UHD4 219 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 SLC24A2Q9UI40 661 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ZNF180Q9UJW8 692 aa21.58■■□□□ 1.05
SHMT1-203ENST00000354098 ASXL3Q9C0F0 2248 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 RFPL3O75679 317 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 WISP3O95389 354 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-203ENST00000354098 TPBGLP0DKB5 382 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 ENO3P13929 434 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-203ENST00000354098 IL2P60568 153 aa21.57■■□□□ 1.04
SHMT1-203ENST00000354098 RAB10P61026 200 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms