RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ATP6AP2O75787 350 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 CCNDBP1O95273 360 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ATP4BP51164 291 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 SPOCK1Q08629 439 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RAB39AQ14964 217 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PLA2G4EQ3MJ16 856 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ZC3H12AQ5D1E8 599 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 FBXO33Q7Z6M2 555 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ZC3H7AQ8IWR0 971 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 XKRYO14609 159 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 IL1BP01584 269 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 MYF6P23409 242 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ZDHHC15Q96MV8 337 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 LOC100130705A0A1B0GUX0 176 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 PRAMEF2O60811 474 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZMPSTE24O75844 475 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 RNASEH2BQ5TBB1 312 aaKnown RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 SSX9Q7RTT3 188 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ADAM2Q99965 735 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 FEM1AQ9BSK4 669 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ABCG8Q9H221 673 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 TNFRSF10DQ9UBN6 386 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 EI24O14681 340 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 MKRN4PQ13434 485 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 COQ5Q5HYK3 327 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 EARS2Q5JPH6 523 aaKnown RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 TAPT1Q6NXT6 567 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 DCAKDQ8WVC6 231 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ELMO3Q96BJ8 720 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 NDC1Q9BTX1 674 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 FMN2Q9NZ56 1722 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 FAM205CA6NFA0 338 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 CXCR6O00574 342 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 FPGTO14772 594 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 LYPLA1O75608 230 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 PRAMEF12O95522 483 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 SERPINA4P29622 427 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 MIPP30301 263 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 PCDH1Q08174 1060 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 INTS6LQ5JSJ4 861 aaKnown RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 Q8N402 240 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 TMEM209Q96SK2 561 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ANKMY1Q9P2S6 941 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 KLQ9UEF7 1012 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 GPR75-ASB3A0A0A6YYF3 556 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 CHRNA1P02708 482 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 NR2C1P13056 603 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 SEC23BQ15437 767 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 SAMD14Q8IZD0 417 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF781Q8N8C0 355 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 MFSD8Q8NHS3 518 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 CD300LFQ8TDQ1 290 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZYG11BQ9C0D3 744 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 PRMT8Q9NR22 394 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 UXTQ9UBK9 157 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 EGFL7Q9UHF1 273 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ASB3Q9Y575 518 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 UPK1BO75841 260 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 IDH3AP50213 366 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 SLC12A3P55017 1021 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 RETSATQ6NUM9 610 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF597Q96LX8 424 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 COQ10AQ96MF6 247 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 IL20Q9NYY1 176 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 RUVBL1Q9Y265 456 aaKnown RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 TRBC1P01850 177 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 GBX2P52951 348 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 MTM1Q13496 603 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 LRTM1Q9HBL6 345 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 PACSIN3Q9UKS6 424 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ERVK-19Q9WJR5 959 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 AIPO00170 330 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 AGR2O95994 175 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZDHHC12Q96GR4 267 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 GTF2IRD1Q9UHL9 959 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 MT-ND2P03891 347 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ETFAP13804 333 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 CRKLP46109 303 aaKnown RBP12.43□□□□□ -0.42
COL6A3-203ENST00000353578 NOMO2Q5JPE7 1267 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 ZDHHC21Q8IVQ6 265 aa12.43□□□□□ -0.42
COL6A3-203ENST00000353578 TRUB2O95900 331 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 SMSP52788 366 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ACTBP60709 375 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ACTG1P63261 375 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 FLI1Q01543 452 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 C10orf120Q5SQS8 335 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 LRRC66Q68CR7 880 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 LRRC57Q8N9N7 239 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 OR1J4Q8NGS1 313 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 RNF31Q96EP0 1072 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 SLC17A7Q9P2U7 560 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 PCDHB1Q9Y5F3 818 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF705EA8MWA4 302 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 INPPL1O15357 1258 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 CDK2P24941 298 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 DSTNP60981 165 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 PRR5P85299 388 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ATXN7L2Q5T6C5 722 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ITIH5Q86UX2 942 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 PIGRP01833 764 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms