RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 TUFMP49411 452 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 HUNKP57058 714 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 DAOAP59103 153 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 NRG1Q02297 640 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 KEAP1Q14145 624 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SEMA3AQ14563 771 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SHROOM1Q2M3G4 852 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 EEF1DP3Q658K8 133 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 OR9I1Q8NGQ6 314 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SNX27Q96L92 541 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 MFSD1Q9H3U5 465 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ATP13A3Q9H7F0 1226 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TMEM45AQ9NWC5 275 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 GPR25O00155 361 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 REM1O75628 298 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PTPRAP18433 802 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 CCR10P46092 362 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ATXN1P54253 815 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ARHGEF6Q15052 776 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SLC10A6Q3KNW5 377 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 RAP1GAP2Q684P5 730 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 MACC1Q6ZN28 852 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 UTS2BQ765I0 119 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 DDX53Q86TM3 631 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FIBCD1Q8N539 461 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FBXO27Q8NI29 283 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 C11orf24Q96F05 449 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LHPPQ9H008 270 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TRPC4Q9UBN4 977 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 MOSPD1Q9UJG1 213 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 EMX2Q04743 252 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 CACNG1Q06432 222 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 IL10RBQ08334 325 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 CPTPQ5TA50 214 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LIX1Q8N485 282 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SLC15A4Q8N697 577 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LRRC20Q8TCA0 184 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ZNF675Q8TD23 568 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TMEM74Q96NL1 305 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PEBP4Q96S96 227 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FNDC11Q9BVV2 318 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 POLR2J2Q9GZM3 115 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 BPIFA1Q9NP55 256 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TBC1D14Q9P2M4 693 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 IFT52Q9Y366 437 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 RPL36Q9Y3U8 105 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PCDHB3Q9Y5E6 796 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 MYOCOSA0A1B0GUC4 107 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 RFPL2O75678 378 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 STK16O75716 305 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ESR1P03372 595 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FMO3P31513 532 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SNRPD1P62314 119 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LIN54Q6MZP7 749 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LGI2Q8N0V4 545 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 CLP1Q92989 425 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FCRL3Q96P31 734 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PIGVQ9NUD9 493 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 COMMD9Q9P000 198 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 NR2E3Q9Y5X4 410 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TSPAN1O60635 241 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TCF3P15923 654 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LEPRP48357 1165 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PSMD4P55036 377 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LAPTM4BQ86VI4 370 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TSPYL5Q86VY4 417 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 OR13J1Q8NGT2 312 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SETD6Q8TBK2 473 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 EEF1AKMT1Q8WVE0 214 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 KCTD13Q8WZ19 329 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ACBD6Q9BR61 282 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FTHL17Q9BXU8 183 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 ANKRA2Q9H9E1 313 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PCDHAC2Q9Y5I4 1007 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 KCNE2Q9Y6J6 123 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 hCG_2039718K7EN88 272 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 STX16O14662 325 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TSPAN4O14817 238 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 NUAK1O60285 661 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 RHOQP17081 205 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 CXCR2P25025 360 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PLA2G16P53816 162 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 USP30Q70CQ3 517 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 MTMR14Q8NCE2 650 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 TINF2Q9BSI4 451 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 OXCT2Q9BYC2 517 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 DPEP3Q9H4B8 488 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SEC14L3Q9UDX4 400 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 NRAPQ86VF7 1730 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 DLGAP1O14490 977 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 SLC25A14O95258 325 aaPredicted RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 FEN1P39748 380 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 RPS14P62263 151 aaKnown RBP4.71□□□□□ -1.66
CSMD3-203ENST00000343508 PNCKQ6P2M8 343 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 BLOC1S3Q6QNY0 202 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 NETO2Q8NC67 525 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 L3HYPDHQ96EM0 354 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 GAD1Q99259 594 aa4.71□□□□□ -1.66
CSMD3-203ENST00000343508 GPR21Q99679 349 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms