RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MGME1Q9BQP7 344 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 AARSD1Q9BTE6 412 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 FAM120CQ9NX05 1096 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CACNA1SQ13698 1873 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 GPR1P46091 355 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SNAPC1Q16533 368 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 FRMD7Q6ZUT3 714 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 GPR142Q7Z601 462 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF558Q96NG5 402 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 MCUBQ9NWR8 336 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TBL1XO60907 577 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 CD72P21854 359 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF132P52740 706 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 PPM1JQ5JR12 505 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 FAM151BQ6UXP7 276 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ZBTB8BQ8NAP8 495 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 HASPINQ8TF76 798 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 OR8D1Q8WZ84 308 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 CCDC177Q9NQR7 707 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TMPRSS4Q9NRS4 437 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TEX28O15482 410 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 FNDC3BQ53EP0 1204 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 METTL2BQ6P1Q9 378 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF570Q96NI8 536 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 MNTQ99583 582 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 GPR21Q99679 349 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 BAIAP2Q9UQB8 552 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TIMM13Q9Y5L4 95 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 DAOAP59103 153 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SMG8Q8ND04 991 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 C7orf57Q8NEG2 295 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 FKBP10Q96AY3 582 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 C1GALT1C1Q96EU7 318 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SMOC2Q9H3U7 446 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 PIP5K1BO14986 540 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC25A12O75746 678 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 MEAF6Q9HAF1 191 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ARHGEF15O94989 841 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 PTPN5P54829 565 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SRP54P61011 504 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 THOC7Q6I9Y2 204 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 RTL4Q6ZR62 310 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC24A5Q71RS6 500 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 POMGNT2Q8NAT1 580 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 MFSD3Q96ES6 412 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TCF25Q9BQ70 676 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 PDCD10Q9BUL8 212 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ITPAQ9BY32 194 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 CYP7B1O75881 506 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 CD247P20963 164 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 NMBRP28336 390 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TAS2R43P59537 309 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 CLEC4DQ8WXI8 215 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TFAP2BQ92481 460 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 NR2E1Q9Y466 385 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC25A14O95258 325 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC15A1P46059 708 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 GALNT2Q10471 571 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 RAET1GQ6H3X3 334 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF783Q6ZMS7 281 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 ASRGL1Q7L266 308 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 HTRA1Q92743 480 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 TXLNGYQ9BZA5 131 aa10.13□□□□□ -0.79
CCDC88A-202ENST00000336838 PIGBOS1A0A0B4J2F0 54 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 KPNA3O00505 521 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 SOX30O94993 753 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CFL1P23528 166 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ABCG1P45844 678 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 TRIM74Q86UV6 250 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 TRIM73Q86UV7 250 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 B3GALT6Q96L58 329 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PWWP2AQ96N64 755 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 HHATLQ9HCP6 504 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 TM9SF3Q9HD45 589 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 FARSBQ9NSD9 589 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 OAZ3Q9UMX2 235 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 OR14I1A6ND48 311 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 POP4O95707 220 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 OAS1P00973 400 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PRNPP04156 253 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ACSL1P33121 698 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ATXN7L2Q5T6C5 722 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CYP4X1Q8N118 509 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 AVL9Q8NBF6 648 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 FKBP14Q9NWM8 211 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PPM1HQ9ULR3 514 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PHIPQ8WWQ0 1821 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 DUXAA6NLW8 204 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 HDCP19113 662 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 PCLAFQ15004 111 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 RPTNQ6XPR3 784 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 KIAA1191Q96A73 305 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ISOC1Q96CN7 298 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 BORCS6Q96GS4 357 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 CGREF1Q99674 301 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 MIPEPQ99797 713 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 EFCAB11Q9BUY7 163 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 C1RP00736 705 aa10.12□□□□□ -0.79
CCDC88A-202ENST00000336838 ANXA4P09525 319 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms