RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NFKBIL1Q9UBC1 381 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 RHCGQ9UBD6 479 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 CFDP1Q9UEE9 299 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 SPIN1Q9Y657 262 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 TSPOAP1O95153 1857 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ABCC10Q5T3U5 1492 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 FAM172BPA6NC97 362 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 BMPR1BO00238 502 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 FGF17O60258 216 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 PRKNO60260 465 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 CRYAAP02489 173 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 OR2T7P0C7T2 308 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 DANCRP0C864 163 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 CKMT2P17540 419 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 GABRA5P31644 462 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 SLC9A3P48764 834 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 CSE1LP55060 971 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 RPS18P62269 152 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 MBTD1Q05BQ5 628 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 PNRC1Q12796 327 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 RNASEH2BQ5TBB1 312 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 GRTP1Q5TC63 336 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 DENND5BQ6ZUT9 1274 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 PLPPR4Q7Z2D5 763 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 MAML2Q8IZL2 1156 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 TTC30BQ8N4P2 665 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 CPSF7Q8N684 471 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 TDRD5Q8NAT2 981 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 TEKT4Q8WW24 435 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF653Q96CK0 615 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 SGK494Q96LW2 274 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 SEPHS2Q99611 448 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 BTBD10Q9BSF8 475 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 LMF2Q9BU23 707 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 ABHD6Q9BV23 337 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 FNDC11Q9BVV2 318 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 GPR88Q9GZN0 384 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 NOL11Q9H8H0 719 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 ZBTB20Q9HC78 741 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 TCF7L2Q9NQB0 619 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 MBNL1Q9NR56 388 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 OLFML3Q9NRN5 406 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 SLC38A7Q9NVC3 462 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 FAM118AQ9NWS6 357 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 DPP3Q9NY33 737 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 OSGIN1Q9UJX0 560 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 ICAM5Q9UMF0 924 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.16□□□□□ -1.92e-7■■■■□ 19.4
HMGB1-201ENST00000326004 PCF11O94913 1555 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 TCF20Q9UGU0 1960 aaKnown RBP3.16□□□□□ -1.9
HMGB1-201ENST00000326004 IFT140Q96RY7 1462 aa3.16□□□□□ -1.9
HMGB1-201ENST00000326004 EDDM13A0A1B0GTR0 161 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 A8MXE2 369 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 TCERG1O14776 1098 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 PSMD10O75832 226 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 FGF5P12034 268 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 PAX1P15863 534 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CBLP22681 906 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 DNASE1P24855 282 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 MARK3P27448 753 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SLC6A6P31641 620 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 PCGF2P35227 344 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 MTHFRP42898 656 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 RAB28P51157 221 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ARL16Q0P5N6 197 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 DMP1Q13316 513 aaPredicted RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 PTPRCAPQ14761 206 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 LETM2Q2VYF4 491 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 FAM76BQ5HYJ3 339 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 MDH1BQ5I0G3 518 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ARMC4Q5T2S8 1044 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CST9LP1Q5W188 147 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 FAM198BQ6UWH4 519 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 RBPMS2Q6ZRY4 209 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 TMPRSS11FQ6ZWK6 438 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 IQCHQ86VS3 1027 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF595Q8IYB9 648 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 LMNTD1Q8N9Z9 388 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 XXYLT1Q8NBI6 393 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SLC24A4Q8NFF2 622 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF473Q8WTR7 871 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SPDL1Q96EA4 605 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ST6GAL2Q96JF0 529 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CNDP2Q96KP4 475 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 OLFM1Q99784 485 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 TRMT61BQ9BVS5 477 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 OR10A4Q9H209 315 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 MMP28Q9H239 520 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 GOLPH3LQ9H4A5 285 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 OPA3Q9H6K4 179 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 ERVMER34-1Q9H9K5 563 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 UPF2Q9HAU5 1272 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC177Q9NQR7 707 aaPredicted RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 TAAR2Q9P1P5 351 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SLC24A2Q9UI40 661 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 FAF1Q9UNN5 650 aaPredicted RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 PROCRQ9UNN8 238 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CCL27Q9Y4X3 112 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 LRP12Q9Y561 859 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SYNJ1O43426 1573 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms