RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 PIK3C3Q8NEB9 887 aa18.23■□□□□ 0.51
PCDH1-201ENST00000287008 TFGQ92734 400 aaPredicted RBP18.23■□□□□ 0.51
PCDH1-201ENST00000287008 ADAP2Q9NPF8 381 aa18.23■□□□□ 0.51
PCDH1-201ENST00000287008 CDH7Q9ULB5 785 aa18.23■□□□□ 0.51
PCDH1-201ENST00000287008 XRN1Q8IZH2 1706 aaKnown RBP18.23■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF865P0CJ78 1059 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 GIMD1P0DJR0 217 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF33AQ06730 810 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 FAM91A1Q658Y4 838 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ARMCX6Q7L4S7 300 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ENKURQ8TC29 256 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CDADC1Q9BWV3 514 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PAIP1Q9H074 479 aaKnown RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ARL8BQ9NVJ2 186 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 HAS3O00219 553 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ANPEPP15144 967 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CTSKP43235 329 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 GALNT2Q10471 571 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PAFAH1B3Q15102 231 aaKnown RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PRAMEF14Q5SWL7 426 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 VWA5B1Q5TIE3 1220 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PRAMEF13Q5VWM6 474 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ANKRD46Q86W74 232 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 COX18Q8N8Q8 333 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 TMEM145Q8NBT3 493 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CCM2Q9BSQ5 444 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CCNB1IP1Q9NPC3 277 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CMTM6Q9NX76 183 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 GRHL1Q9NZI5 618 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 TTC24A2A3L6 582 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 KDELR3O43731 214 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 HLA-EP13747 358 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 IL12BP29460 328 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PITRM1Q5JRX3 1037 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 WDR45BQ5MNZ6 344 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 CRELD2Q6UXH1 353 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 GSTCDQ8NEC7 633 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ST13P5Q8NFI4 369 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ADCY4Q8NFM4 1077 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 SFXN1Q9H9B4 322 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ECDO95905 644 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 MZT2AQ6P582 158 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 NAPRTQ6XQN6 538 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PEG10Q86TG7 708 aaKnown RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF781Q8N8C0 355 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 VRTNQ9H8Y1 702 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 FETUBQ9UGM5 382 aa18.22■□□□□ 0.51
PCDH1-201ENST00000287008 PTPRZ1P23471 2315 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-201ENST00000287008 C9JVG2 144 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 CNTN5O94779 1100 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 ALOX12P18054 663 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 GRIA1P42261 906 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 PGDP52209 483 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 SLBPQ14493 270 aaKnown RBP eCLIP18.21■□□□□ 0.51
PCDH1-201ENST00000287008 UAP1L1Q3KQV9 507 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 OR7A2PQ8NGA2 310 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 AGXTP21549 392 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 IRF5Q13568 498 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 SLC39A5Q6ZMH5 540 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 MBOAT1Q6ZNC8 495 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 FAM92BQ6ZTR7 304 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 NUDT13Q86X67 352 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 NAT8LQ8N9F0 302 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 OSBPL11Q9BXB4 747 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 MUC13Q9H3R2 512 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 USP29Q9HBJ7 922 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 MAGEB17A8MXT2 336 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 DNAJA2O60884 412 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 WFS1O76024 890 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 ATP1B2P14415 290 aaPredicted RBP18.21■□□□□ 0.51
PCDH1-201ENST00000287008 TCF4P15884 667 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 LIPEQ05469 1076 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 C12orf76Q8N812 135 aaPredicted RBP18.21■□□□□ 0.51
PCDH1-201ENST00000287008 AGAP11Q8TF27 550 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 HSD3B7Q9H2F3 369 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 TMEM248Q9NWD8 314 aa18.21■□□□□ 0.51
PCDH1-201ENST00000287008 A0A0G2JN53 185 aa18.21■□□□□ 0.5
PCDH1-201ENST00000287008 PDPK1O15530 556 aa18.21■□□□□ 0.5
PCDH1-201ENST00000287008 RGS20O76081 388 aa18.21■□□□□ 0.5
PCDH1-201ENST00000287008 CD247P20963 164 aa18.21■□□□□ 0.5
PCDH1-201ENST00000287008 CCKBRP32239 447 aa18.21■□□□□ 0.5
PCDH1-201ENST00000287008 CDK9P50750 372 aaKnown RBP18.21■□□□□ 0.5
PCDH1-201ENST00000287008 LENG8Q96PV6 779 aaPredicted RBP18.21■□□□□ 0.5
PCDH1-201ENST00000287008 G3V2T6 193 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 LRRC66Q68CR7 880 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 OAFQ86UD1 273 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 NALCNQ8IZF0 1738 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 JSRP1Q96MG2 331 aaPredicted RBP18.2■□□□□ 0.5
PCDH1-201ENST00000287008 P2RY13Q9BPV8 354 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 KCNN2Q9H2S1 579 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 ZCCHC3Q9NUD5 404 aaKnown RBP18.2■□□□□ 0.5
PCDH1-201ENST00000287008 COCHO43405 550 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 PRAMEF11O60813 436 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 NRLP54845 237 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 OC90Q02509 493 aaPredicted RBP18.2■□□□□ 0.5
PCDH1-201ENST00000287008 FAM174BQ3ZCQ3 159 aa18.2■□□□□ 0.5
PCDH1-201ENST00000287008 CXXC5Q7LFL8 322 aaKnown RBP18.2■□□□□ 0.5
PCDH1-201ENST00000287008 PQLC1Q8N2U9 271 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms