RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TBC1D3HP0C7X1 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 PIK3R1P27986 724 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 STARD3Q14849 445 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 HABP4Q5JVS0 413 aaKnown RBP16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3GQ6DHY5 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3CQ6IPX1 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 SDE2Q6IQ49 451 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TMEM92Q6UXU6 159 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 GK5Q6ZS86 529 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3Q8IZP1 549 aaPredicted RBP16.14■□□□□ 0.18
USP4-201ENST00000265560 METTL6Q8TCB7 284 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 ASB11Q8WXH4 323 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 THTPAQ9BU02 230 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 UBE2ZQ9H832 354 aaPredicted RBP16.14■□□□□ 0.18
USP4-201ENST00000265560 MEAF6Q9HAF1 191 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 RASSF9O75901 435 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 ALDOCP09972 364 aaKnown RBP16.14■□□□□ 0.17
USP4-201ENST00000265560 AOC1P19801 751 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 TMEM52BQ4KMG9 183 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 NRSN1Q8IZ57 195 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 C2orf73Q8N5S3 287 aaPredicted RBP16.14■□□□□ 0.17
USP4-201ENST00000265560 OR56A4Q8NGH8 313 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 MCUR1Q96AQ8 359 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 C1orf50Q9BV19 199 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 MOSPD1Q9UJG1 213 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 RNF11Q9Y3C5 154 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 PSMD11O00231 422 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 MBTPS2O43462 519 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 ESRRBO95718 433 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 FTH1P02794 183 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 COX4I1P13073 169 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 TNFRSF4P43489 277 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 RASSF2P50749 326 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 ENPP2Q13822 863 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 KANK2Q63ZY3 851 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 KIAA1324Q6UXG2 1013 aaKnown RBP16.14■□□□□ 0.17
USP4-201ENST00000265560 Q6ZS52 159 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 PACS2Q86VP3 889 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 VPS35Q96QK1 796 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 CCM2Q9BSQ5 444 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 OPTCQ9UBM4 332 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 SLC23A2Q9UGH3 650 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 LNPEPQ9UIQ6 1025 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 SLC22A14Q9Y267 594 aa16.14■□□□□ 0.17
USP4-201ENST00000265560 AXIN1O15169 862 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 UBDO15205 165 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 POP7O75817 140 aaKnown RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 DNTTP04053 509 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 RPL10P27635 214 aaKnown RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 GALNT1Q10472 559 aaPredicted RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 PTCHD3Q3KNS1 767 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 LRIT3Q3SXY7 679 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 PREPLQ4J6C6 727 aaPredicted RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 ZNF776Q68DI1 518 aaPredicted RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 TRMT11Q7Z4G4 463 aaKnown RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 AFAP1L2Q8N4X5 818 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 PDPRQ8NCN5 879 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 OR2T11Q8NH01 316 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 MAELQ96JY0 434 aaKnown RBP16.13■□□□□ 0.17
USP4-201ENST00000265560 CD244Q9BZW8 370 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 PARVBQ9HBI1 364 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 KLC4Q9NSK0 619 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 A0A1W2PQU0 124 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 LOC730098B7Z3J9 87 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 C5AR1P21730 350 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 CCNG1P51959 295 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 DIO3P55073 304 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 GRSF1Q12849 480 aaKnown RBP eCLIP16.13■□□□□ 0.17
USP4-201ENST00000265560 NAA25Q14CX7 972 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 PAOXQ6QHF9 649 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 CYP2U1Q7Z449 544 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 MILR1Q7Z6M3 343 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 FAM13CQ8NE31 585 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 OR2T3Q8NH03 318 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 HMGCLL1Q8TB92 370 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 C2orf42Q9NWW7 574 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 POLG2Q9UHN1 485 aa16.13■□□□□ 0.17
USP4-201ENST00000265560 ARHGEF33A8MVX0 844 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 ANXA5P08758 320 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 HIST1H2AGP0C0S8 130 aaPredicted RBP16.12■□□□□ 0.17
USP4-201ENST00000265560 HGFP14210 728 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 HIST1H2ADP20671 130 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 MSX2P35548 267 aaPredicted RBP16.12■□□□□ 0.17
USP4-201ENST00000265560 PRLHRP49683 370 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 CPSF6Q16630 551 aaKnown RBP eCLIP16.12■□□□□ 0.17
USP4-201ENST00000265560 PNCKQ6P2M8 343 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 FAM83HQ6ZRV2 1179 aaPredicted RBP16.12■□□□□ 0.17
USP4-201ENST00000265560 LARP4Q71RC2 724 aaKnown RBP eCLIP16.12■□□□□ 0.17
USP4-201ENST00000265560 HIST1H2AHQ96KK5 128 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 HIST1H2AJQ99878 128 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 H2AFJQ9BTM1 129 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 MRPL40Q9NQ50 206 aaKnown RBP16.12■□□□□ 0.17
USP4-201ENST00000265560 RAD18Q9NS91 495 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 CFAP73A6NFT4 308 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 NUAK1O60285 661 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 ENTPD5O75356 428 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 PGM1P36871 562 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 IL27RAQ6UWB1 636 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 RNF175Q8N4F7 328 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms