RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 GJA9P57773 515 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 HERV-K104P61576 105 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 BDH1Q02338 343 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 GRK1Q15835 563 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 LAS2Q8IYD9 372 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 YIPF7Q8N8F6 280 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 HDAC7Q8WUI4 952 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TUBGCP5Q96RT8 1024 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 AGO3Q9H9G7 860 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 FARSBQ9NSD9 589 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CYTH4Q9UIA0 394 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ERVK-7P63135 1459 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 GLI2P10070 1586 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 AURKAO14965 403 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ARPC2O15144 300 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PAGE1O75459 146 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 LYPLA1O75608 230 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DDNO94850 711 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 IFNA2P01563 188 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 FCER2P06734 321 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CD52P31358 61 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 HCAR3P49019 387 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 NCBP2P52298 156 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PIWIL1Q96J94 861 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TTYH2Q9BSA4 534 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SNRNP25Q9BV90 132 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 HIPK3Q9H422 1215 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 COMMD3Q9UBI1 195 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 COMMD3-BMI1R4GMX3 469 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 OR1D2P34982 312 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 OGFOD2Q6N063 350 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ABHD13Q7L211 337 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CUZD1Q86UP6 607 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 KIAA0319LQ8IZA0 1049 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF676Q8N7Q3 588 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 LRMDAQ9H2I8 198 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 GBX2P52951 348 aaPredicted RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MAD2L1BPQ15013 274 aaPredicted RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CLEC12AQ5QGZ9 265 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 POC1BQ8TC44 478 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SORCS3Q9UPU3 1222 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MSI1O43347 362 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TACSTD2P09758 323 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MSR1P21757 451 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 EDNRAP25101 427 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SPAM1P38567 509 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 C1QTNF8P60827 252 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ENPP2Q13822 863 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 JAGN1Q8N5M9 183 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 THAP6Q8TBB0 222 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TMEM125Q96AQ2 219 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 FABP12A6NFH5 140 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 NFATC1O95644 943 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SHBGP04278 402 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ALPPP05187 535 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 RPL5P46777 297 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 PIWIL4Q7Z3Z4 852 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TBC1D15Q8TC07 691 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SCGB1C1Q8TD33 95 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 NXNL1Q96CM4 212 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 FN3KQ9H479 309 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ZDHHC9Q9Y397 364 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MUSKO15146 869 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 RAB4AP20338 218 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CORO1AP31146 461 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TARDBPQ13148 414 aaKnown RBP eCLIP11.22□□□□□ -0.615e-6■□□□□ 11.3
PTPN4-201ENST00000263708 STOML3Q8TAV4 291 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 GDF3Q9NR23 364 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TMEM150CB9EJG8 249 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SCDO00767 359 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 NUDT17P0C025 328 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 AIMP2Q13155 320 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 C12orf29Q8N999 325 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 PCDHGB1Q9Y5G3 927 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MT-ND1P03886 318 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 VAMP1P23763 118 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 GPR139Q6DWJ6 353 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 VITQ6UXI7 678 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 OR5J2Q8NH18 312 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MRPS17Q9Y2R5 130 aaKnown RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TMX2Q9Y320 296 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 FXYD6-FXYD2A0A087WZ82 144 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ELOVL7A1L3X0 281 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 B4DGG1 531 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 SASH3O75995 380 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 UBXN11Q5T124 520 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF550Q7Z398 422 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 TMED4Q7Z7H5 227 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 FXYD6Q9H0Q3 95 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 OR10A4Q9H209 315 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 POLLQ9UGP5 575 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 PCDHGB7Q9Y5F8 929 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 AIREO43918 545 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 CDK14O94921 469 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 ANGPTL1O95841 491 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 MT-CYBP00156 380 aaPredicted RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 DHPSP49366 369 aaPredicted RBP11.22□□□□□ -0.61
PTPN4-201ENST00000263708 PLA2G16P53816 162 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 HYAL2Q12891 473 aa11.22□□□□□ -0.61
PTPN4-201ENST00000263708 VMACQ2NL98 169 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms