RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GGT1P19440 569 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 CYP2C18P33260 490 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 CBX2Q14781 532 aaPredicted RBP14.13□□□□□ -0.15
SDC1-201ENST00000254351 ZFP69Q49AA0 526 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 ZNF648Q5T619 568 aaPredicted RBP14.13□□□□□ -0.15
SDC1-201ENST00000254351 ATG16L2Q8NAA4 619 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 TP53I13Q8NBR0 393 aaPredicted RBP14.13□□□□□ -0.15
SDC1-201ENST00000254351 CHST13Q8NET6 341 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 ZNF560Q96MR9 790 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 OR51E2Q9H255 320 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 KAT8Q9H7Z6 458 aaKnown RBP14.13□□□□□ -0.15
SDC1-201ENST00000254351 FBXO8Q9NRD0 319 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 TAS2R16Q9NYV7 291 aa14.13□□□□□ -0.15
SDC1-201ENST00000254351 UPK3BL1B0FP48 263 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 UPK3BL2E5RIL1 263 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 CXCR6O00574 342 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 CD3EAPO15446 510 aaKnown RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 RGS10O43665 173 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 TLR5O60602 858 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 EFNA1P20827 205 aaPredicted RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 ADRA1AP35348 466 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 AP5B1Q2VPB7 878 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 GPR153Q6NV75 609 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 ZCCHC8Q6NZY4 707 aaKnown RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 TRAF7Q6Q0C0 670 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 FAM217AQ8IXS0 508 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 SVOPQ8N4V2 548 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 ASCC1Q8N9N2 400 aaKnown RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 ZMIZ2Q8NF64 920 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 GPR21Q99679 349 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 ACOT13Q9NPJ3 140 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 KIF17Q9P2E2 1029 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 KRT87PA6NCN2 255 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 TNFRSF10AO00220 468 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 HAPLN1P10915 354 aaPredicted RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 NAT1P18440 290 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 CYP20A1Q6UW02 462 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 Q6ZSR9 355 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 NECAB2Q7Z6G3 386 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 GALNT12Q8IXK2 581 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 MINDY2Q8NBR6 621 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 EXOC2Q96KP1 924 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 TMEM209Q96SK2 561 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 NUAK2Q9H093 628 aa14.12□□□□□ -0.15
SDC1-201ENST00000254351 TMEFF2Q9UIK5 374 aaPredicted RBP14.12□□□□□ -0.15
SDC1-201ENST00000254351 CTDSP2O14595 271 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 MATN3O15232 486 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 TULP3O75386 442 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 GRK5P34947 590 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 TRIM60Q495X7 471 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 BCL7AQ4VC05 210 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 CARD16Q5EG05 197 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 SIRPB2Q5JXA9 342 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 SPANXN4Q5MJ08 99 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 IRAK1BP1Q5VVH5 260 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 SIDT2Q8NBJ9 832 aaKnown RBP14.11□□□□□ -0.15
SDC1-201ENST00000254351 GIPC2Q8TF65 315 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 TRIB2Q92519 343 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 BTN2A3PQ96KV6 586 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 CPNE5Q9HCH3 593 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 TXNRD2Q9NNW7 524 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 NECTIN3Q9NQS3 549 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 C8orf4Q9NR00 106 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 FARSBQ9NSD9 589 aaKnown RBP14.11□□□□□ -0.15
SDC1-201ENST00000254351 SMPD4Q9NXE4 827 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 EHD3Q9NZN3 535 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 ZNF112Q9UJU3 913 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 ABCG2Q9UNQ0 655 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 AGAP5A6NIR3 686 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 OR1I1O60431 355 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 LRATO95237 230 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 PRKCAP17252 672 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 FCGRTP55899 365 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 TIAL1Q01085 375 aaKnown RBP eCLIP14.11□□□□□ -0.152e-7■■■■■ 33.2
SDC1-201ENST00000254351 GALNT1Q10472 559 aaPredicted RBP14.11□□□□□ -0.15
SDC1-201ENST00000254351 PON2Q15165 354 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 NRARPQ7Z6K4 114 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 ARRDC4Q8NCT1 418 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 OR7G1Q8NGA0 311 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 YIPF6Q96EC8 236 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 CDCA5Q96FF9 252 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 ATOH8Q96SQ7 321 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 BPIFA1Q9NP55 256 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 UBQLN1Q9UMX0 589 aaKnown RBP14.11□□□□□ -0.15
SDC1-201ENST00000254351 TPRKBQ9Y3C4 175 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 PCM1Q15154 2024 aa14.11□□□□□ -0.15
SDC1-201ENST00000254351 SMIM30A4D0T7 59 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CENPXA8MT69 81 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ADM5C9JUS6 153 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 HMBSP08397 361 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 FGF4P08620 206 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CCNCP24863 283 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 KRT20P35900 424 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 GDF5P43026 501 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ERVK-8P63133 956 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 FOXM1Q08050 763 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 GBX1Q14549 363 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 MAPKAPK3Q16644 382 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CEP78Q5JTW2 689 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SDHAF4Q5VUM1 108 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms