RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZSCAN26Q16670 478 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 SPDYE1Q8NFV5 336 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 CLDN23Q96B33 292 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 TMEM159Q96B96 161 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 TRIM55Q9BYV6 548 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 PHPT1Q9NRX4 125 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 KLHL14Q9P2G3 628 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 PDE10AQ9Y233 779 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 PLEKHM1Q9Y4G2 1056 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 C10orf142B7Z368 130 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 KPNA5O15131 536 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 H2AFYO75367 372 aaKnown RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 CEACAM5P06731 702 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 MYCLP1P12525 358 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 ARHGAP8P85298 464 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 VWA5B1Q5TIE3 1220 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 UBE2R2Q712K3 238 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 PIWIL2Q8TC59 973 aaKnown RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 C1QTNF7Q9BXJ2 289 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 CHRDQ9H2X0 955 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 WSB2Q9NYS7 404 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 GPR34Q9UPC5 381 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 SIT1Q9Y3P8 196 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 OARD1Q9Y530 152 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 TAPBPO15533 448 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 GRID2O43424 1007 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 PI15O43692 258 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 NPHS1O60500 1241 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 SNX2O60749 519 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 TGDSO95455 350 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 GDF5P43026 501 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 AQP5P55064 265 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 ZXDCQ2QGD7 858 aaPredicted RBP19.68■□□□□ 0.74
CLN3-250ENST00000636839 CCSMST1Q4G0I0 132 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 FRMD7Q6ZUT3 714 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 BIRC7Q96CA5 298 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 CNDP1Q96KN2 507 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 COG4Q9H9E3 785 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 EIF2B4Q9UI10 523 aaKnown RBP19.68■□□□□ 0.74
CLN3-250ENST00000636839 TROVE2P10155 538 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLN3-250ENST00000636839 TEAD1P28347 426 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 ALDH18A1P54886 795 aaKnown RBP19.68■□□□□ 0.74
CLN3-250ENST00000636839 TCEA2Q15560 299 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 LINC00615Q96LM1 132 aaPredicted RBP19.68■□□□□ 0.74
CLN3-250ENST00000636839 EBF4Q9BQW3 602 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 TMEM120AQ9BXJ8 343 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 NUDT4Q9NZJ9 180 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 MOSPD1Q9UJG1 213 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 ARL2BPQ9Y2Y0 163 aa19.68■□□□□ 0.74
CLN3-250ENST00000636839 GON4LQ3T8J9 2241 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 IGHV1OR15-9A0A0B4J2B8 117 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 CCDC189A1A4V9 331 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 GFYI3L273 518 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 ZNF195O14628 629 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 MATN4O95460 622 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 MPC1LP0DKB6 136 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 CD6P30203 668 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 RPIAP49247 311 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 ASPHQ12797 758 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 SETDB1Q15047 1291 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 CHST15Q7LFX5 561 aaPredicted RBP19.67■□□□□ 0.74
CLN3-250ENST00000636839 LRRTM4Q86VH4 590 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 SLC22A15Q8IZD6 547 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 SPEM1Q8N4L4 309 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 OR2L2Q8NH16 312 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 TRPC4APQ8TEL6 797 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 ASB12Q8WXK4 309 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 ZNF514Q96K75 400 aaPredicted RBP19.67■□□□□ 0.74
CLN3-250ENST00000636839 PPP1R36Q96LQ0 422 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 EGFL8Q99944 293 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 SLC12A9Q9BXP2 914 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 ILKAPQ9H0C8 392 aaPredicted RBP19.67■□□□□ 0.74
CLN3-250ENST00000636839 ZBTB26Q9HCK0 441 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 FGF22Q9HCT0 170 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 SEMA4BQ9NPR2 832 aaPredicted RBP19.67■□□□□ 0.74
CLN3-250ENST00000636839 PNMA8BQ9ULN7 279 aaPredicted RBP19.67■□□□□ 0.74
CLN3-250ENST00000636839 FIS1Q9Y3D6 152 aa19.67■□□□□ 0.74
CLN3-250ENST00000636839 MGAT4DA6NG13 374 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 JUNP05412 331 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 VCLP18206 1134 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 HNRNPA2B1P22626 353 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 HSPA7P48741 367 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 SH3BP2P78314 561 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 GCNT7Q6ZNI0 430 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 RAB44Q7Z6P3 723 aaPredicted RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 AMZ2Q86W34 360 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 WDR75Q8IWA0 830 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 MAPK15Q8TD08 544 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 GLMNQ92990 594 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 RHBDF1Q96CC6 855 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 PARVBQ9HBI1 364 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 PTBP2Q9UKA9 531 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 PSMD13Q9UNM6 376 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 SLC17A4Q9Y2C5 497 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 RAP2CQ9Y3L5 183 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 USH1CQ9Y6N9 552 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 ARHGEF33A8MVX0 844 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 EIF3FO00303 357 aaPredicted RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 RPS17P08708 135 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms