RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TBC1D3DA0A087WVF3 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3IA0A087WXS9 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3EA0A087X179 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3KA0A087X1G2 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 A0A1W2PQ67 120 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3FA6NER0 549 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3LB9A6J9 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 K7EPI3 171 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 NFKBIEO00221 500 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PLK4O00444 970 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PRKCGP05129 697 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3HP0C7X1 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 HCAR3P49019 387 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 MAPK12P53778 367 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 INCA1Q0VD86 236 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 HERC3Q15034 1050 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3GQ6DHY5 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3CQ6IPX1 549 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PIM3Q86V86 326 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 TBC1D3Q8IZP1 549 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 MOSPD2Q8NHP6 518 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 GTPBP3Q969Y2 492 aaKnown RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 LRRC58Q96CX6 371 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PIWIL1Q96J94 861 aaKnown RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 ART5Q96L15 291 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PCDHGA11Q9Y5H2 935 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 CACNB4O00305 520 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 PER2O15055 1255 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 OR5F1O95221 314 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 GNAZP19086 355 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 WASP42768 502 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 CDH15P55291 814 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 CDCA2Q69YH5 1023 aaPredicted RBP13.81□□□□□ -0.2
CPSF1-212ENST00000616140 GPR153Q6NV75 609 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 KRT77Q7Z794 578 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 SLC43A3Q8NBI5 491 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 NLGN2Q8NFZ4 835 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 SEC14L1Q92503 715 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 ZNF570Q96NI8 536 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 NPY6RQ99463 290 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 AASDHPPTQ9NRN7 309 aa13.81□□□□□ -0.2
CPSF1-212ENST00000616140 SSNA1O43805 119 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 KERAO60938 352 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 ZBTB48P10074 688 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PSMD4P55036 377 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 NADK2Q4G0N4 442 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 NOL9Q5SY16 702 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 ZNF730Q6ZMV8 503 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CHST9Q7L1S5 443 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CAND1Q86VP6 1230 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PHYKPLQ8IUZ5 450 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 MFSD1Q9H3U5 465 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 TMEM138Q9NPI0 162 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 LAG3P18627 525 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CCR3P51677 355 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 DGKQP52824 942 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 IKBIPQ70UQ0 350 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 FAM220AQ7Z4H9 259 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RGL4Q8IZJ4 473 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 DIABLOQ9NR28 239 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PHPT1Q9NRX4 125 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 DNAJB9Q9UBS3 223 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 SLC38A8A6NNN8 435 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 FESP07332 822 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 MYCLP1P12525 358 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CYP4F8P98187 520 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 DCST1Q5T197 706 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RPS27LQ71UM5 84 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 FAM124AQ86V42 546 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RELL1Q8IUW5 271 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 LRRC17Q8N6Y2 441 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 KCTD13Q8WZ19 329 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 KLHL32Q96NJ5 620 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 TMEM209Q96SK2 561 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 GPR88Q9GZN0 384 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 XYLT2Q9H1B5 865 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CCDC177Q9NQR7 707 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RUVBL1Q9Y265 456 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RP1L1Q8IWN7 2480 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PSIP1O75475 530 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 ECI2O75521 394 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 EOMESO95936 686 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 CHRM5P08912 532 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 LAMP2P13473 410 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 RGS8P57771 180 aaPredicted RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PCLAFQ15004 111 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 PAFAH1B3Q15102 231 aaKnown RBP13.8□□□□□ -0.2
CPSF1-212ENST00000616140 MBLAC2Q68D91 279 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 OSTM1Q86WC4 334 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 TREML1Q86YW5 311 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 HID1Q8IV36 788 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 SVOPLQ8N434 492 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 SLC9A6Q92581 669 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 SIRPGQ9P1W8 387 aa13.8□□□□□ -0.2
CPSF1-212ENST00000616140 TRBV23OR9-2A0A075B6M9 112 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CCL16O15467 120 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 KLHL18O94889 574 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 AP2A2O94973 939 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 SAGP10523 405 aaPredicted RBP13.79□□□□□ -0.2
CPSF1-212ENST00000616140 ACVRL1P37023 503 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms