RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PNMA8BQ9ULN7 279 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 NAALAD2Q9Y3Q0 740 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 A3GALT2U3KPV4 340 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 MGAMO43451 1857 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 RAB19A4D1S5 217 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 AQP12BA6NM10 295 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 E2F3O00716 465 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 FZD6O60353 706 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 ATP6V1B2P21281 511 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PSMA4P25789 261 aaKnown RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 HNF4AP41235 474 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 SGCAQ16586 387 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 IQCCQ4KMZ1 466 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 FAM102AQ5T9C2 384 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 SPOCD1Q6ZMY3 1216 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 AQP12AQ8IXF9 295 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 C8orf59Q8N0T1 100 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 C7orf31Q8N865 590 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 YIPF7Q8N8F6 280 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 ZNF680Q8NEM1 530 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 HDAC10Q969S8 669 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 C18orf25Q96B23 403 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 SIPA1Q96FS4 1042 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 MS4A4AQ96JQ5 239 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PTPN18Q99952 460 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 TINAGL1Q9GZM7 467 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 CCDC90BQ9GZT6 254 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 C8orf33Q9H7E9 229 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 PRMT7Q9NVM4 692 aaPredicted RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 KLHL21Q9UJP4 597 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 SARDHQ9UL12 918 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 ANKRD6Q9Y2G4 727 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PCDHGB2Q9Y5G2 931 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PNMA8CA0A1B0GUJ8 204 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 H3BQ06 376 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 NUPL2O15504 423 aaKnown RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 DFNA5O60443 496 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TFE3P19532 575 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 MAP2K6P52564 334 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 PTPN11Q06124 597 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 ABRQ12979 859 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TMEM132DQ14C87 1099 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TSC22D1Q15714 1073 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 MARCH8Q5T0T0 291 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 MPP7Q5T2T1 576 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 LDLRAD1Q5T700 205 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 LAMTOR1Q6IAA8 161 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TIGD7Q6NT04 549 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 SCYL2Q6P3W7 929 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ZNF557Q8N988 423 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 SLC35B2Q8TB61 432 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 UTP15Q8TED0 518 aaKnown RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 UBXN10Q96LJ8 280 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 CNPY3Q9BT09 278 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 RANBP3Q9H6Z4 567 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 GPATCH2LQ9NWQ4 482 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 COA4Q9NYJ1 87 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 CACNG4Q9UBN1 327 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 RAB23Q9ULC3 237 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ACSL5Q9ULC5 683 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TBC1D24Q9ULP9 559 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 KCNU1A8MYU2 1149 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 LOC110117498-PIK3R3F6TDL0 507 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 SYN3O14994 580 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 LRCH4O75427 683 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 UGT2B17O75795 530 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 C2P06681 752 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 CSH1P0DML2 217 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 CSH2P0DML3 217 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ACVR2AP27037 513 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 UGT2B15P54855 530 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 GDF10P55107 478 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 EMX1Q04741 257 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 STX5Q13190 355 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ZIK1Q3SY52 487 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 C10orf62Q5T681 223 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 OR6B2Q6IFH4 312 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 NPNTQ6UXI9 565 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 NECAB2Q7Z6G3 386 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ACOT1Q86TX2 421 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 STK32CQ86UX6 486 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 JAZF1Q86VZ6 243 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 OR4D10Q8NGI6 311 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS39-214ENST00000614932 TMEM176AQ96HP8 235 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 NECTIN4Q96NY8 510 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 MNTQ99583 582 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 BBS2Q9BXC9 721 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 DCSTAMPQ9H295 470 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 GOLGA2P5Q9HBQ8 144 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 TLR9Q9NR96 1032 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 SMYD2Q9NRG4 433 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 DCDC2Q9UHG0 476 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 PFDN2Q9UHV9 154 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 ELF5Q9UKW6 265 aaPredicted RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 SPATA2Q9UM82 520 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 PCDHGB1Q9Y5G3 927 aa10.07□□□□□ -0.8
VPS39-214ENST00000614932 DICER1Q9UPY3 1922 aaKnown RBP10.07□□□□□ -0.8
VPS39-214ENST00000614932 ATP6AP2A0A1C7CYW4 349 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TCRBV5S1A1TA0A578 114 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms