RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	UQCRB	P14927	111 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	GLRB	P48167	497 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ACADVL	P49748	655 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	DGKE	P52429	567 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	TAS2R38	P59533	333 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SQLE	Q14534	574 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	UBXN2B	Q14CS0	331 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF423	Q2M1K9	1284 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	IRAK1BP1	Q5VVH5	260 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	HACD2	Q6Y1H2	254 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341		Q6ZS52	159 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	USP30	Q70CQ3	517 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	NLRP8	Q86W28	1048 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SIX5	Q8N196	739 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PQLC1	Q8N2U9	271 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PYDC1	Q8WXC3	89 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	MRGPRX1	Q96LB2	322 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	COPS8	Q99627	209 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	CLPB	Q9H078	707 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SLC6A17	Q9H1V8	727 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	POLM	Q9NP87	494 aa	Predicted RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ZDHHC3	Q9NYG2	299 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	TAS2R13	Q9NYV9	303 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SERGEF	Q9UGK8	458 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	FZD4	Q9ULV1	537 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	FAM170B	A6NMN3	283 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341		H3BMM5	538 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	PLRG1	O43660	514 aa	Known RBP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	BCAS2	O75934	225 aa	Predicted RBP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	PDE5A	O76074	875 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	RHOBTB1	O94844	696 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	LYN	P07948	512 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	NDUFV2	P19404	249 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	IMPDH1	P20839	514 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	CD9	P21926	228 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	FDXR	P22570	491 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	ME2	P23368	584 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	RPS3	P23396	243 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	PAX7	P23759	505 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	NSG1	P42857	185 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	DPT	Q07507	201 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	MED21	Q13503	144 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	ART3	Q13508	389 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	SETMAR	Q53H47	684 aa	Predicted RBP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	RNF111	Q6ZNA4	994 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	SYT13	Q7L8C5	426 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	KCNJ9	Q92806	393 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	NUS1	Q96E22	293 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	VPS35	Q96QK1	796 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	OLFM1	Q99784	485 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	P2RY12	Q9H244	342 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341		Q9H521	79 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	WDR41	Q9HAD4	459 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	GNPTG	Q9UJJ9	305 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	COQ6	Q9Y2Z9	468 aa		11.5	□□□□□ -0.57
VRK3-223	ENST00000601341	COPG1	Q9Y678	874 aa	Known RBP	11.5	□□□□□ -0.57
VRK3-223	ENST00000601341		A8MT66	165 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341		H0YJX3	145 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	AIM2	O14862	343 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	VPS26A	O75436	327 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	PYGL	P06737	847 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	FES	P07332	822 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CA5A	P35218	305 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	HSPA13	P48723	471 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CDKN2D	P55273	166 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	RPS21	P63220	83 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	PDAP1	Q13442	181 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	FLOT2	Q14254	428 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	SPATS1	Q496A3	300 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	GPRC6A	Q5T6X5	926 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	PTRHD1	Q6GMV3	140 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CCNYL1	Q8N7R7	359 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	ADCY4	Q8NFM4	1077 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	OR14C36	Q8NHC7	312 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	RHEBL1	Q8TAI7	183 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	BTN2A2	Q8WVV5	523 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CCDC124	Q96CT7	223 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	MRPL1	Q9BYD6	325 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	SUCO	Q9UBS9	1254 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	ADAMTS6	Q9UKP5	1117 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CNOT11	Q9UKZ1	510 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	MTF2	Q9Y483	593 aa	Predicted RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	ATG2B	Q96BY7	2078 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	IGLV3-16	A0A075B6K0	115 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	IGLON5	A6NGN9	336 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	FADS2P1	A8MWK0	482 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CFAP99	D6REC4	459 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341		E5RI56	91 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	DENR	O43583	198 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	AHCYL1	O43865	530 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	FGF4	P08620	206 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CCDC166	P0CW27	439 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	GABRG2	P18507	467 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	CHRM3	P20309	590 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	ADPRH	P54922	357 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	SH3BGR	P55822	239 aa	Predicted RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	TRAP1	Q12931	704 aa	Known RBP	11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	FZD5	Q13467	585 aa		11.49	□□□□□ -0.57
VRK3-223	ENST00000601341	PTK2B	Q14289	1009 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms