RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LNPEPQ9UIQ6 1025 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 RARRES3Q9UL19 164 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 CCDC78A2IDD5 438 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 OR6C74A6NCV1 312 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 OR5K3A6NET4 321 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 KATNA1O75449 491 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 ZNF189O75820 626 aaPredicted RBP19.95■□□□□ 0.78
SHMT1-209ENST00000582653 TIAF1O95411 115 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 CDC25BP30305 580 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 CASRP41180 1078 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 ARCN1P48444 511 aaKnown RBP19.95■□□□□ 0.78
SHMT1-209ENST00000582653 PRLHRP49683 370 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 SKIDA1Q1XH10 827 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 GPR33Q49SQ1 333 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 PWWP2BQ6NUJ5 590 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 TAS2R42Q7RTR8 314 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 SERPINA9Q86WD7 417 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 TXLNBQ8N3L3 684 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 NLE1Q9NVX2 485 aaPredicted RBP19.95■□□□□ 0.78
SHMT1-209ENST00000582653 ZDHHC3Q9NYG2 299 aa19.95■□□□□ 0.78
SHMT1-209ENST00000582653 UBA6A0AVT1 1052 aaPredicted RBP19.94■□□□□ 0.78
SHMT1-209ENST00000582653 CFAP99D6REC4 459 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 CREG1O75629 220 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 FURINP09958 794 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 EBLN1P0CF75 366 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 HSD11B2P80365 405 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 TUBB3Q13509 450 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 KRT33BQ14525 404 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 DNTTIP2Q5QJE6 756 aaKnown RBP19.94■□□□□ 0.78
SHMT1-209ENST00000582653 FBXO38Q6PIJ6 1188 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 D2HGDHQ8N465 521 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 CLDN19Q8N6F1 224 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 OR4E2Q8NGC2 313 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 HM13Q8TCT9 377 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 CDKN2AIPNLQ96HQ2 116 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 PPM1MQ96MI6 270 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 NRTNQ99748 197 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 EPN3Q9H201 632 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 KIR3DX1Q9H7L2 352 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 POLHQ9Y253 713 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 COLEC10Q9Y6Z7 277 aa19.94■□□□□ 0.78
SHMT1-209ENST00000582653 IGLV3-16A0A075B6K0 115 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 TRBV5-4A0A0C4DH59 114 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 TLCD2A6NGC4 264 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 C21orf140B9A014 251 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 H7C0S8 307 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 AP2A1O95782 977 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 ACRV1P26436 265 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 ARL4DP49703 201 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 DNASE1L3Q13609 305 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 P3H1Q32P28 736 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 OOSP2Q86WS3 158 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 PIANPQ8IYJ0 282 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 CARFQ8N187 725 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 OR52K1Q8NGK4 314 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 HEXDCQ8WVB3 486 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 CCM2Q9BSQ5 444 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 GPR87Q9BY21 358 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 COG4Q9H9E3 785 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 FGF21Q9NSA1 209 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 GUCA1BQ9UMX6 200 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 SPTA1P02549 2419 aa19.93■□□□□ 0.78
SHMT1-209ENST00000582653 UBR5O95071 2799 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 C17orf113A0A1B0GUU1 675 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 PIPSLA2A3N6 862 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 PSMD3O43242 534 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 NTRK1P04629 796 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 POLR2CP19387 275 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 PDHA2P29803 388 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 ZNF658BQ4V348 819 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 CCDC38Q502W7 563 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 LACTB2Q53H82 288 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 ARMC6Q6NXE6 501 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 PRUNE1Q86TP1 453 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 RNF10Q8N5U6 811 aaKnown RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 PHC3Q8NDX5 983 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 CT55Q8WUE5 264 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 STYXQ8WUJ0 223 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 FERD3LQ96RJ6 166 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 AKIRIN1Q9H9L7 192 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-209ENST00000582653 KCND1Q9NSA2 647 aa19.92■□□□□ 0.78
SHMT1-209ENST00000582653 MROH6A6NGR9 719 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 OR51F1A6NGY5 319 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 LIASO43766 372 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 ZBTB11O95625 1053 aaPredicted RBP19.91■□□□□ 0.78
SHMT1-209ENST00000582653 NDUFS1P28331 727 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 KPNA2P52292 529 aaKnown RBP19.91■□□□□ 0.78
SHMT1-209ENST00000582653 TUBB4BP68371 445 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 CACNG1Q06432 222 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 TUBB2AQ13885 445 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 DBN1Q16643 649 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 TCTN3Q6NUS6 607 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 OR8K5Q8NH50 307 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 C1orf54Q8WWF1 131 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 SEC14L1Q92503 715 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 TUBB2BQ9BVA1 445 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 TWSG1Q9GZX9 223 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 OR52A5Q9H2C5 316 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 ETNK1Q9HBU6 452 aa19.91■□□□□ 0.78
SHMT1-209ENST00000582653 SMARCAL1Q9NZC9 954 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms