RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FBXL6Q8N531 539 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 RHEBL1Q8TAI7 183 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 STAG3L4Q8TBR4 150 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 C20orf27Q9GZN8 174 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 SLCO1B3Q9NPD5 702 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 DMDP11532 3685 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 PLXND1Q9Y4D7 1925 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 CCDC163A0A0D9SF12 145 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 C17orf113A0A1B0GUU1 675 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 A8MT66 165 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 TCP11X1B4DZS4 312 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 KPNA5O15131 536 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 KERAO60938 352 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 RPL10P27635 214 aaKnown RBP24.57■■□□□ 1.52
SHMT1-207ENST00000580002 RABIFP47224 123 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 EIF2B5Q13144 721 aaKnown RBP24.57■■□□□ 1.52
SHMT1-207ENST00000580002 FZD2Q14332 565 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 LONP2Q86WA8 852 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 OXR1Q8N573 874 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 HM13Q8TCT9 377 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 ESAMQ96AP7 390 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 MAGEB18Q96M61 343 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 TM9SF3Q9HD45 589 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 OXSMQ9NWU1 459 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 KLQ9UEF7 1012 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 NEFHP12036 1026 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 AK4P27144 223 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-207ENST00000580002 SRP54P61011 504 aaKnown RBP24.57■■□□□ 1.52
SHMT1-207ENST00000580002 CCSMST1Q4G0I0 132 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 FAM219BQ5XKK7 198 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 GPSM1Q86YR5 675 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 HID1Q8IV36 788 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 SLC22A15Q8IZD6 547 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 RGL4Q8IZJ4 473 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 ASB11Q8WXH4 323 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 KLHDC7BQ96G42 594 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 TMEM168Q9H0V1 697 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 PCED1AQ9H1Q7 454 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 DUSP15Q9H1R2 295 aaPredicted RBP24.57■■□□□ 1.52
SHMT1-207ENST00000580002 MANSC1Q9H8J5 431 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 GPR27Q9NS67 375 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 WDR37Q9Y2I8 494 aa24.57■■□□□ 1.52
SHMT1-207ENST00000580002 CEP192Q8TEP8 1941 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 SUPT3HB4E1H0 165 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 F8W8V4 182 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 BIRC5O15392 142 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 ITM2AO43736 263 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 SUPT3HO75486 399 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 GUCA1CO95843 209 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 MPC1LP0DKB6 136 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 ENO3P13929 434 aaPredicted RBP24.56■■□□□ 1.52
SHMT1-207ENST00000580002 ITPKAP23677 461 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 HTR1BP28222 390 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 AVPR2P30518 371 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 KPNA2P52292 529 aaKnown RBP24.56■■□□□ 1.52
SHMT1-207ENST00000580002 PFKFB4Q16877 469 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 GLMNQ92990 594 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 FAM126AQ9BYI3 521 aaPredicted RBP24.56■■□□□ 1.52
SHMT1-207ENST00000580002 PDE10AQ9Y233 779 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 ASB1Q9Y576 335 aa24.56■■□□□ 1.52
SHMT1-207ENST00000580002 ATXN2Q99700 1313 aaKnown RBP24.56■■□□□ 1.52
SHMT1-207ENST00000580002 SPTY2D1-AS1A0A0U1RR47 76 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 GPR89AB7ZAQ6 455 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 H3BM21 787 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 LIN7AO14910 233 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 SIX3O95343 332 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 GPR89BP0CG08 455 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 ATP5F1P24539 256 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 AGTR2P50052 363 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 SF3A3Q12874 501 aaKnown RBP eCLIP24.55■■□□□ 1.522e-6■■■■■ 29.6
SHMT1-207ENST00000580002 TGFBIQ15582 683 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 PRAMEF14Q5SWL7 426 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 SPATS2Q86XZ4 545 aaKnown RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 LRRC34Q8IZ02 419 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 ZNF317Q96PQ6 595 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 GATA5Q9BWX5 397 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 OR52A5Q9H2C5 316 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 OSGEPL1Q9H4B0 414 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 CCDC134Q9H6E4 229 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 NCKIPSDQ9NZQ3 722 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 CFAP20Q9Y6A4 193 aaKnown RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 DNMT3AQ9Y6K1 912 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-207ENST00000580002 VPS13AQ96RL7 3174 aa24.55■■□□□ 1.52
SHMT1-207ENST00000580002 SHOX2O60902 331 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 LYPLA1O75608 230 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 RASGRP1O95267 797 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 MATN4O95460 622 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 CD38P28907 300 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 NUDT1P36639 197 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 BDKRB1P46663 353 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 BST1Q10588 318 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 METRNLQ641Q3 311 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 THADAQ6YHU6 1953 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 FAM47EQ6ZV65 393 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 UBE2R2Q712K3 238 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 RASGRP3Q8IV61 690 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 PTGR2Q8N8N7 351 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-207ENST00000580002 PHC3Q8NDX5 983 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 OR6Y1Q8NGX8 325 aa24.54■■□□□ 1.52
SHMT1-207ENST00000580002 RDH11Q8TC12 318 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms