RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLC15A1P46059 708 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 HTR3AP46098 478 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CAPZA2P47755 286 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PTH2RP49190 550 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ERFP50548 548 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ANXA11P50995 505 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 TKTL1P51854 596 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 HK3P52790 923 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 DCDC1P59894 354 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MYL5Q02045 173 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TEFQ10587 303 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 FOXO1Q12778 655 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 BFSP1Q12934 665 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CHAF1BQ13112 559 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MED21Q13503 144 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PIN1Q13526 163 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 DYRK1AQ13627 763 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SELPLGQ14242 412 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZNF267Q14586 743 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 MORF4L2Q15014 288 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CDK10Q15131 360 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PON2Q15165 354 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 DPCR1Q3MIW9 517 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CERKLQ49MI3 558 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 KRTCAP3Q53RY4 240 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ESCO2Q56NI9 601 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 EARS2Q5JPH6 523 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 SAPCD1Q5SSQ6 148 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 UBAP2Q5T6F2 1119 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 SLC9A4Q6AI14 798 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SP5Q6BEB4 398 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 NANOGP8Q6NSW7 305 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RETSATQ6NUM9 610 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RINT1Q6NUQ1 792 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 C3orf33Q6P1S2 294 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 NFRKBQ6P4R8 1299 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ERICH5Q6P6B1 374 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SUSD1Q6UWL2 747 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RAD9BQ6WBX8 426 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZNF852Q6ZMS4 543 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 C4orf50Q6ZRC1 276 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SLC16A12Q6ZSM3 486 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 GPRIN3Q6ZVF9 776 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ENOSF1Q7L5Y1 443 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 NUP54Q7Z3B4 507 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TLK2Q86UE8 772 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PDSS2Q86YH6 399 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TDRPQ86YL5 185 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PRR18Q8N4B5 295 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MARVELD2Q8N4S9 558 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZNF366Q8N895 744 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 Q8N9G6 341 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 FAM71DQ8N9W8 422 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 Q8NA96 180 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZBTB44Q8NCP5 570 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ICA1LQ8NDH6 482 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 OR5H6Q8NGV6 325 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CLHC1Q8NHS4 586 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TBC1D16Q8TBP0 767 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RAET1EQ8TD07 263 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 BRIX1Q8TDN6 353 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 HEXDCQ8WVB3 486 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TFAP2BQ92481 460 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SMG7Q92540 1137 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 GTF3AQ92664 365 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 HDAC2Q92769 488 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 STMN2Q93045 179 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PTP4A1Q93096 173 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SCAMP4Q969E2 229 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TUBGCP3Q96CW5 907 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 EDC3Q96F86 508 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 VCPIP1Q96JH7 1222 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CAPZA3Q96KX2 299 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 FAM227BQ96M60 508 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PPP1R2P1Q96PQ5 205 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RMDN3Q96TC7 470 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 VKORC1Q9BQB6 163 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ADPGKQ9BRR6 497 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CNPPD1Q9BV87 410 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CDK19Q9BWU1 502 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TEKT3Q9BXF9 490 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PINK1Q9BXM7 581 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 WDR12Q9GZL7 423 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 USP44Q9H0E7 712 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SIK2Q9H0K1 926 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MYLK2Q9H1R3 596 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 HSD3B7Q9H2F3 369 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 HIPK3Q9H422 1215 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 OSGEPL1Q9H4B0 414 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CAB39LQ9H9S4 337 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SPACA1Q9HBV2 294 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MCCC2Q9HCC0 563 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PNPLA8Q9NP80 782 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 RPRD1BQ9NQG5 326 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 OLFML3Q9NRN5 406 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 ZNF275Q9NSD4 429 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 SACM1LQ9NTJ5 587 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 OLA1Q9NTK5 396 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 DDX28Q9NUL7 540 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 NUDT15Q9NV35 164 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms