RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 AGAP3Q96P47 875 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 NRTNQ99748 197 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 GSX1Q9H4S2 264 aaPredicted RBP11.4□□□□□ -0.58
CLK3-222ENST00000568232 ZFYVE1Q9HBF4 777 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 MCCC2Q9HCC0 563 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 SEMA3GQ9NS98 782 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 FBXL4Q9UKA2 621 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 FER1L5A0AVI2 2057 aa11.4□□□□□ -0.58
CLK3-222ENST00000568232 CCDC66A2RUB6 948 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 POP7O75817 140 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 MTHFD1P11586 935 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 DRD2P14416 443 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 PVRP15151 417 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 TCF4P15884 667 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 CA7P43166 264 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 RPL26P61254 145 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 XRCC4Q13426 336 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 ALG1LQ6GMV1 187 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 RPUSD3Q6P087 351 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 POLNQ7Z5Q5 900 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 AMZ2Q86W34 360 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 CARFQ8N187 725 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 OR4E2Q8NGC2 313 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 GDAP1Q8TB36 358 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 COG1Q8WTW3 980 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 NR4A3Q92570 626 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 MTFMTQ96DP5 389 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 CSPG4P5Q96PW8 444 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 NPDC1Q9NQX5 325 aaPredicted RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 C1GALT1Q9NS00 363 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 RBM22Q9NW64 420 aaKnown RBP eCLIP11.39□□□□□ -0.59
CLK3-222ENST00000568232 TAS2R14Q9NYV8 317 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 IFT80Q9P2H3 777 aaPredicted RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 NDOR1Q9UHB4 597 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 SLC24A2Q9UI40 661 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 POMT2Q9UKY4 750 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 RPL26L1Q9UNX3 145 aaKnown RBP11.39□□□□□ -0.59
CLK3-222ENST00000568232 SPTBP11277 2137 aa11.39□□□□□ -0.59
CLK3-222ENST00000568232 SMAPO00193 183 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 RNF8O76064 485 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 WISP2O76076 250 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 KLHL18O94889 574 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 HLA-DQB2P05538 268 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 CTSBP07858 339 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 MMP2P08253 660 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 MST1P26927 711 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 IL1R2P27930 398 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 PBLDP30039 288 aaPredicted RBP11.38□□□□□ -0.59
CLK3-222ENST00000568232 ARL4AP40617 200 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 CTSCP53634 463 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 DCDC1P59894 354 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 ATP13A5Q4VNC0 1218 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 MRPL14Q6P1L8 145 aaKnown RBP11.38□□□□□ -0.59
CLK3-222ENST00000568232 MTFR2Q6P444 385 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 CDHR3Q6ZTQ4 885 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 TMC3Q7Z5M5 1100 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 PSTKQ8IV42 348 aaKnown RBP11.38□□□□□ -0.59
CLK3-222ENST00000568232 HSPH1Q92598 858 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 SPRTNQ9H040 489 aaPredicted RBP11.38□□□□□ -0.59
CLK3-222ENST00000568232 WWP1Q9H0M0 922 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 EPS8L2Q9H6S3 715 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 SYTL2Q9HCH5 934 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 DHCR7Q9UBM7 475 aaKnown RBP11.38□□□□□ -0.59
CLK3-222ENST00000568232 PCDHGB6Q9Y5F9 930 aa11.38□□□□□ -0.59
CLK3-222ENST00000568232 VPS13CQ709C8 3753 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 GSAPA4D1B5 854 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 TMEM191CA6NGB0 347 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 HCRTR1O43613 425 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 FAM155BO75949 473 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 HBQ1P09105 142 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 MSL3P1P0C860 447 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 HLA-DPA1P20036 260 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 CA4P22748 312 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 CES1P23141 567 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 PRDX3P30048 256 aaKnown RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 CD86P42081 329 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 ZNF165P49910 485 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 ZNF135P52742 658 aaPredicted RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 DCDP81605 110 aaKnown RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 DMPKQ09013 629 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 GTF2H3Q13889 308 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 SYCP1Q15431 976 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 DPYSL2Q16555 572 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 PDPK2PQ6A1A2 396 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 ACAD10Q6JQN1 1059 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 NCCRP1Q6ZVX7 275 aaPredicted RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 RASGEF1AQ8N9B8 481 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 MAML1Q92585 1016 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 THOC3Q96J01 351 aaKnown RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 C12orf66Q96MD2 445 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 AGPAT1Q99943 283 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 C17orf62Q9BQA9 187 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 TRIM56Q9BRZ2 755 aaKnown RBP11.37□□□□□ -0.59
CLK3-222ENST00000568232 LHPPQ9H008 270 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 KIR3DX1Q9H7L2 352 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 BPIFA1Q9NP55 256 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 PLA2G3Q9NZ20 509 aa11.37□□□□□ -0.59
CLK3-222ENST00000568232 OR2AG2A6NM03 316 aa11.36□□□□□ -0.59
CLK3-222ENST00000568232 TMCO5BA8MYB1 307 aa11.36□□□□□ -0.59
CLK3-222ENST00000568232 H3BMH7 237 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms