RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DRG2P55039 364 aaKnown RBP16.9■□□□□ 0.3
CLN3-217ENST00000565354 DMPKQ09013 629 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 HLTFQ14527 1009 aaKnown RBP eCLIP16.9■□□□□ 0.3
CLN3-217ENST00000565354 SYTL3Q4VX76 610 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZNF470Q6ECI4 717 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 PRICKLE2Q7Z3G6 844 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 SLC9B2Q86UD5 537 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 KCNMB4Q86W47 210 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 CCDC25Q86WR0 208 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 SFTPA2Q8IWL1 248 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 CFAP206Q8IYR0 622 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZBED8Q8IZ13 594 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ARL14Q8N4G2 192 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 AVL9Q8NBF6 648 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 FBXO36Q8NEA4 188 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ART4Q93070 314 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 CCDC74AQ96AQ1 378 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 LINC00615Q96LM1 132 aaPredicted RBP16.9■□□□□ 0.3
CLN3-217ENST00000565354 TCF12Q99081 682 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 EPB41L5Q9HCM4 733 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 SAYSD1Q9NPB0 183 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 FAM114A2Q9NRY5 505 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 LRIT1Q9P2V4 623 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 GNPTGQ9UJJ9 305 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 VPS9D1Q9Y2B5 631 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 PRSS21Q9Y6M0 314 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZFC3H1O60293 1989 aaKnown RBP16.89■□□□□ 0.3
CLN3-217ENST00000565354 KIR2DS5A0A0G2JLQ3 304 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 A0A0G2JNG1 304 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 ESYT3A0FGR9 886 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 KIR2DS3K7RE56 304 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 EIF3HO15372 352 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLN3-217ENST00000565354 GSTM1P09488 218 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 SLC35G4P0C7Q5 338 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 DEKP35659 375 aaKnown RBP16.89■□□□□ 0.29
CLN3-217ENST00000565354 EIF3BP55884 814 aaKnown RBP16.89■□□□□ 0.29
CLN3-217ENST00000565354 GSTM4Q03013 218 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 KIR2DS5Q14953 304 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 IYDQ6PHW0 289 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 CCDC81Q6ZN84 652 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 LRRC6Q86X45 466 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 LMNTD2Q8IXW0 634 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 GPR150Q8NGU9 434 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 SLC37A2Q8TED4 501 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 PYROXD1Q8WU10 500 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 ELMO1Q92556 727 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 CXorf40BQ96DE9 158 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 ATXN7L3BQ96GX2 97 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 PRR11Q96HE9 360 aaPredicted RBP16.89■□□□□ 0.29
CLN3-217ENST00000565354 CCDC3Q9BQI4 270 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 ZMYND15Q9H091 742 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 IARS2Q9NSE4 1012 aaKnown RBP16.89■□□□□ 0.29
CLN3-217ENST00000565354 ACSL5Q9ULC5 683 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 PSMD13Q9UNM6 376 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 PCDHGA8Q9Y5G5 932 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 TEX264Q9Y6I9 313 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 RNF215Q9Y6U7 377 aa16.89■□□□□ 0.29
CLN3-217ENST00000565354 BSNQ9UPA5 3926 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 C17orf113A0A1B0GUU1 675 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 CDRT15L2A8MXV6 281 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 SGTAO43765 313 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 NUDT21O43809 227 aaKnown RBP16.88■□□□□ 0.29
CLN3-217ENST00000565354 EML2O95834 649 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 VIPP01282 170 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 ITGB6P18564 788 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 HHEXQ03014 270 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 TYSND1Q2T9J0 566 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 HSP90AA5PQ58FG0 334 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 PERM1Q5SV97 790 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 UNC5AQ6ZN44 842 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 FAM83HQ6ZRV2 1179 aaPredicted RBP16.88■□□□□ 0.29
CLN3-217ENST00000565354 CILP2Q8IUL8 1156 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 IGDCC3Q8IVU1 814 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 PALM2Q8IXS6 379 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 SFRP1Q8N474 314 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 Q8N9G6 341 aaPredicted RBP16.88■□□□□ 0.29
CLN3-217ENST00000565354 FBXO25Q8TCJ0 367 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 IFT81Q8WYA0 676 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 SH3KBP1Q96B97 665 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 CERS2Q96G23 380 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 PANX3Q96QZ0 392 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 FOXP3Q9BZS1 431 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 CCDC68Q9H2F9 335 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 COG4Q9H9E3 785 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 INTS10Q9NVR2 710 aaKnown RBP16.88■□□□□ 0.29
CLN3-217ENST00000565354 MTRF1LQ9UGC7 380 aaKnown RBP16.88■□□□□ 0.29
CLN3-217ENST00000565354 IL17BQ9UHF5 180 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 ENTPD2Q9Y5L3 495 aa16.88■□□□□ 0.29
CLN3-217ENST00000565354 E7ESA3 106 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 TP73O15350 636 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 ERVK-10P10266 1014 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 FMO4P31512 558 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 CTBP1Q13363 440 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 BOP1Q14137 746 aaKnown RBP16.87■□□□□ 0.29
CLN3-217ENST00000565354 BRD3Q15059 726 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 TMED2Q15363 201 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 TRADDQ15628 312 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 AGAP9Q5VTM2 703 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 METRNLQ641Q3 311 aa16.87■□□□□ 0.29
CLN3-217ENST00000565354 ABRAXAS1Q6UWZ7 409 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms