RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PRMT9Q6P2P2 845 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 MTFR2Q6P444 385 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 EFL1Q7Z2Z2 1120 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 WDR53Q7Z5U6 358 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 FAM131BQ86XD5 332 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SCN4BQ8IWT1 228 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 DCP1BQ8IZD4 617 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 SRBD1Q8N5C6 995 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 SLC25A41Q8N5S1 370 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CMASQ8NFW8 434 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 OR8K5Q8NH50 307 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 PPP1R35Q8TAP8 253 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 RASSF5Q8WWW0 418 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 NCSTNQ92542 709 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 DPF1Q92782 380 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CELF1Q92879 486 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 FAM162AQ96A26 154 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 AZIN2Q96A70 460 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 VPS33AQ96AX1 596 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SIPA1Q96FS4 1042 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 MASTLQ96GX5 879 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TPD52L3Q96J77 140 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CENPKQ9BS16 269 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 APOL6Q9BWW8 343 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 BBS2Q9BXC9 721 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TBC1D10AQ9BXI6 508 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 FRMD8Q9BZ67 464 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 NAPBQ9H115 298 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 NUP62CLQ9H1M0 184 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 BLZF1Q9H2G9 400 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 OSGEPL1Q9H4B0 414 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 RIBC2Q9H4K1 309 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SH2D4AQ9H788 454 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 EPB41L5Q9HCM4 733 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TMEM8AQ9HCN3 771 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 ERVK-5Q9HDB9 667 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 PALMDQ9NP74 551 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 NT5MQ9NPB1 228 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 NRIP3Q9NQ35 241 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 DIABLOQ9NR28 239 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SIRT3Q9NTG7 399 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 C20orf96Q9NUD7 363 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 SOHLH2Q9NX45 425 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 ZSCAN32Q9NX65 697 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 STMN3Q9NZ72 180 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 THEGQ9P2T0 379 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 DNAJB9Q9UBS3 223 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CYB5R1Q9UHQ9 305 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 LNPEPQ9UIQ6 1025 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 ZNF215Q9UL58 517 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS35-205ENST00000563984 FAF1Q9UNN5 650 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 GINS2Q9Y248 185 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CHKBQ9Y259 395 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 WBP11Q9Y2W2 641 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 ZNF175Q9Y473 711 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 WDR7Q9Y4E6 1490 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 AOX1Q06278 1338 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 UBN2Q6ZU65 1347 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ZNF644Q9H582 1327 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 A0A0U1RQV5 110 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PVALEFA0A1B0GWK0 134 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 hCG_1809904A0A1W2PP81 198 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 A0A1W2PPE2 198 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 A0A1W2PR64 198 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 A4D1N5 150 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 A8MX80 341 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM227AF5H4B4 570 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 LAD1O00515 517 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SH2B2O14492 632 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 ZNF263O14978 683 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PHGDHO43175 533 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 PI15O43692 258 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NOS1APO75052 506 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 MTX2O75431 263 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CTAG2O75638 210 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 TUSC2O75896 110 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CABYRO75952 493 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CCNB2O95067 398 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NSA2O95478 260 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 RAB3DO95716 219 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PTBP3O95758 552 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 APOA1P02647 267 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 TUBB4AP04350 444 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 INHBAP08476 426 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 EBLN1P0CF75 366 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NCF1P14598 390 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 NR2F2P24468 414 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PEX2P28328 305 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PCSK6P29122 969 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PHBP35232 272 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PIK3CBP42338 1070 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SLC1A4P43007 532 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CASP4P49662 377 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CLCNKAP51800 687 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ARFIP2P53365 341 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 IST1P53990 364 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PROK1P58294 105 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ILF2Q12905 390 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 TRAF2Q12933 501 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms