RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KLK8O60259 260 aa13□□□□□ -0.33
CLN3-210ENST00000563874 E2F6O75461 281 aa13□□□□□ -0.33
CLN3-210ENST00000563874 EPOP01588 193 aa13□□□□□ -0.33
CLN3-210ENST00000563874 ZNF24P17028 368 aa13□□□□□ -0.33
CLN3-210ENST00000563874 ITGB6P18564 788 aa13□□□□□ -0.33
CLN3-210ENST00000563874 PWP1Q13610 501 aa13□□□□□ -0.33
CLN3-210ENST00000563874 FAM174BQ3ZCQ3 159 aa13□□□□□ -0.33
CLN3-210ENST00000563874 RBM48Q5RL73 367 aaKnown RBP13□□□□□ -0.33
CLN3-210ENST00000563874 TTC23Q5W5X9 447 aa13□□□□□ -0.33
CLN3-210ENST00000563874 MRPL10Q7Z7H8 261 aaKnown RBP13□□□□□ -0.33
CLN3-210ENST00000563874 LGI2Q8N0V4 545 aa13□□□□□ -0.33
CLN3-210ENST00000563874 CLHC1Q8NHS4 586 aa13□□□□□ -0.33
CLN3-210ENST00000563874 CNIH3Q8TBE1 160 aa13□□□□□ -0.33
CLN3-210ENST00000563874 HDAC2Q92769 488 aaKnown RBP13□□□□□ -0.33
CLN3-210ENST00000563874 FAM162AQ96A26 154 aa13□□□□□ -0.33
CLN3-210ENST00000563874 C1QTNF3Q9BXJ4 246 aa13□□□□□ -0.33
CLN3-210ENST00000563874 ACTR8Q9H981 624 aa13□□□□□ -0.33
CLN3-210ENST00000563874 TMEM247A6NEH6 219 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 C16orf96A6NNT2 1141 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 GDF5P43026 501 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 HMGCS1Q01581 520 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 IL1RL1Q01638 556 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 TUBA3CQ13748 450 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 FRA10AC1Q70Z53 315 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 TAMM41Q96BW9 452 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 AURKBQ96GD4 344 aaPredicted RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 ZNF382Q96SR6 550 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 PARK7Q99497 189 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 OSBPL10Q9BXB5 764 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 CCSER2Q9H7U1 834 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 FARSBQ9NSD9 589 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 NOD1Q9Y239 953 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 C2orf81A6NN90 581 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 ANKRD28O15084 1053 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 TAF10Q12962 218 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 NIPAL1Q6NVV3 410 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 GCNT7Q6ZNI0 430 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 GOLGA7Q7Z5G4 137 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 GALNT5Q7Z7M9 940 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 KRTCAP2Q8N6L1 136 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 SLC13A3Q8WWT9 602 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 SH3YL1Q96HL8 342 aaPredicted RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 UGT2B28Q9BY64 529 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 HEBP1Q9NRV9 189 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 DNAJB9Q9UBS3 223 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 SNX5Q9Y5X3 404 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 PTPRDP23468 1912 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 NLRC5Q86WI3 1866 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 FAM92AA1XBS5 289 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 DRGXA6NNA5 263 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 ARVCFO00192 962 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 OR7A17O14581 309 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 PARNO95453 639 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 NPPAP01160 153 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 PRLP01236 227 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 CYP4B1P13584 511 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 HOXD9P28356 352 aaPredicted RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 MRPL19P49406 292 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 GP2P55259 537 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 PPP2R2BQ00005 443 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 TRIP4Q15650 581 aaPredicted RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 SPANXN4Q5MJ08 99 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 NECAB2Q7Z6G3 386 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 NODALQ96S42 347 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 CINPQ9BW66 212 aaPredicted RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 FBXO44Q9H4M3 255 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 NSUN3Q9H649 340 aaKnown RBP12.99□□□□□ -0.33
CLN3-210ENST00000563874 PDFQ9HBH1 243 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 FBXO10Q9UK96 956 aa12.99□□□□□ -0.33
CLN3-210ENST00000563874 A0A0U1RQF3 1178 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 SLC1A7O00341 560 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 MITFO75030 526 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 JAK1P23458 1154 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 HALP42357 657 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 HSPA7P48741 367 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 KPNA1P52294 538 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 CYP4F3Q08477 520 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 MAPKAPK3Q16644 382 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 NCCRP1Q6ZVX7 275 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 ZNF548Q8NEK5 533 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 MAGED4Q96JG8 741 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 IPPKQ9H8X2 491 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 PALMDQ9NP74 551 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 SLC6A13Q9NSD5 602 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLN3-210ENST00000563874 SLC25A37Q9NYZ2 338 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 LOC100130705A0A1B0GUX0 176 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 KRBA1A5PL33 1030 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 TRIM43BA6NCK2 446 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 PFKLP17858 780 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 TACR2P21452 398 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 RPS24P62847 133 aaKnown RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 GSTM4Q03013 218 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 GTF2H2Q13888 395 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 TAF1AQ15573 450 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 MORN1Q5T089 497 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 C9orf131Q5VYM1 1079 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 GTF2H2CQ6P1K8 395 aa12.98□□□□□ -0.33
CLN3-210ENST00000563874 USP50Q70EL3 339 aaPredicted RBP12.98□□□□□ -0.33
CLN3-210ENST00000563874 DET1Q7L5Y6 550 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 245.2 ms