RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 NKAIN2Q5VXU1 208 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 ZDHHC24Q6UX98 284 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 TMPRSS9Q7Z410 1059 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 PIM3Q86V86 326 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 ANKMY2Q8IV38 441 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 SLITRK4Q8IW52 837 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 ZBED8Q8IZ13 594 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 KRT222Q8N1A0 295 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 FBXO25Q8TCJ0 367 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 ZFPM2Q8WW38 1151 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 TMEM159Q96B96 161 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 TMEM74Q96NL1 305 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 NUDT22Q9BRQ3 303 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 TBC1D10AQ9BXI6 508 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 IARS2Q9NSE4 1012 aaKnown RBP16.33■□□□□ 0.2
CLK3-207ENST00000562389 FBXO5Q9UKT4 447 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 CRYL1Q9Y2S2 319 aa16.33■□□□□ 0.2
CLK3-207ENST00000562389 KPNA5O15131 536 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 GPC4O75487 556 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 ERVK-10P10266 1014 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 AOAHP28039 575 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 PLTPP55058 493 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 INHBCP55103 352 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 CFHR1Q03591 330 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 ZFP36L1Q07352 338 aaKnown RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 BRD3Q15059 726 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 TMED2Q15363 201 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 TRADDQ15628 312 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 ZNF789Q5FWF6 425 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 DUS1LQ6P1R4 473 aaKnown RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 WDR74Q6RFH5 385 aaPredicted RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 B3GNT8Q7Z7M8 397 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 GALNT7Q86SF2 657 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 C2CD4AQ8NCU7 369 aaPredicted RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 OR4D9Q8NGE8 314 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 ASZ1Q8WWH4 475 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 LIN37Q96GY3 246 aaPredicted RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 FOXP3Q9BZS1 431 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 NRSN2Q9GZP1 204 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 KIR3DX1Q9H7L2 352 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 RDH14Q9HBH5 336 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 FBXO6Q9NRD1 293 aaPredicted RBP16.32■□□□□ 0.2
CLK3-207ENST00000562389 COLEC10Q9Y6Z7 277 aa16.32■□□□□ 0.2
CLK3-207ENST00000562389 ESYT3A0FGR9 886 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 UBXN7O94888 489 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 APOA4P06727 396 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 PKMP14618 531 aaKnown RBP16.31■□□□□ 0.2
CLK3-207ENST00000562389 ACADLP28330 430 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 LEPRP48357 1165 aaKnown RBP16.31■□□□□ 0.2
CLK3-207ENST00000562389 LIMK2P53671 638 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 MPP1Q00013 466 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 GUCY2DQ02846 1103 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 TMEM71Q6P5X7 295 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 NAPRTQ6XQN6 538 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 ZNF574Q6ZN55 896 aaPredicted RBP16.31■□□□□ 0.2
CLK3-207ENST00000562389 KIAA0408Q6ZU52 694 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 USP53Q70EK8 1073 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 SLC22A15Q8IZD6 547 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 GSDMBQ8TAX9 411 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 TFGQ92734 400 aaPredicted RBP16.31■□□□□ 0.2
CLK3-207ENST00000562389 ATXN7L3BQ96GX2 97 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 FAM129AQ9BZQ8 928 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 STRADBQ9C0K7 418 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 ZMYND15Q9H091 742 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 MVB12BQ9H7P6 319 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 SAYSD1Q9NPB0 183 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 LATS2Q9NRM7 1088 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 OGFRQ9NZT2 677 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 CDYLQ9Y232 598 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 COMMD10Q9Y6G5 202 aa16.31■□□□□ 0.2
CLK3-207ENST00000562389 KIF26BQ2KJY2 2108 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 MN1Q10571 1320 aaPredicted RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 CCDC187A0A096LP49 1063 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 IGHV5-10-1A0A0J9YXX1 117 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 TRABD2BA6NFA1 517 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 NIPSNAP2O75323 286 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 SLCO2B1O94956 709 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 PROS1P07225 676 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 F7P08709 466 aaPredicted RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 THRAP10827 490 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 HOXB3P14651 431 aaPredicted RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 MAPK9P45984 424 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 CAPZBP47756 277 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 HSPA14Q0VDF9 509 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 EIF3IQ13347 325 aaKnown RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 TRA2AQ13595 282 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLK3-207ENST00000562389 RTP5Q14D33 572 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 PLEKHS1Q5SXH7 462 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 TRMT10BQ6PF06 316 aaKnown RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 UNQ6494/PRO21346Q6UXR6 183 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 OTOAQ7RTW8 1153 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 PYROXD1Q8WU10 500 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 NXPE2Q96DL1 559 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 CCDC68Q9H2F9 335 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 SEMA6CQ9H3T2 930 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 PPANQ9NQ55 473 aaKnown RBP16.3■□□□□ 0.2
CLK3-207ENST00000562389 FAM114A2Q9NRY5 505 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 ZDHHC18Q9NUE0 388 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 MOCS1Q9NZB8 636 aa16.3■□□□□ 0.2
CLK3-207ENST00000562389 PDP2Q9P2J9 529 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms