RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RSRC1Q96IZ7 334 aaKnown RBP11□□□□□ -0.65
USP3-218ENST00000560202 NSRP1Q9H0G5 558 aaKnown RBP11□□□□□ -0.65
USP3-218ENST00000560202 ZNF395Q9H8N7 513 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 RMI1Q9H9A7 625 aa11□□□□□ -0.65
USP3-218ENST00000560202 COG4Q9H9E3 785 aa11□□□□□ -0.65
USP3-218ENST00000560202 THAP1Q9NVV9 213 aa11□□□□□ -0.65
USP3-218ENST00000560202 NCKIPSDQ9NZQ3 722 aa11□□□□□ -0.65
USP3-218ENST00000560202 ZNHIT2Q9UHR6 403 aa11□□□□□ -0.65
USP3-218ENST00000560202 ADAMTS6Q9UKP5 1117 aa11□□□□□ -0.65
USP3-218ENST00000560202 INVSQ9Y283 1065 aa11□□□□□ -0.65
USP3-218ENST00000560202 ZBTB32Q9Y2Y4 487 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 NUMA1Q14980 2115 aa11□□□□□ -0.65
USP3-218ENST00000560202 TMEM114B3SHH9 223 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 AXIN1O15169 862 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 KMOO15229 486 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 DCXO43602 365 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 ITM2AO43736 263 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 KLK8O60259 260 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 DNAJC8O75937 253 aaPredicted RBP10.99□□□□□ -0.65
USP3-218ENST00000560202 FUCA1P04066 466 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 GFAPP14136 432 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 AOC1P19801 751 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 IMPDH1P20839 514 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 KELP23276 732 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 PREPP48147 710 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 SLC1A6P48664 564 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 HK3P52790 923 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 YPEL5P62699 121 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 OCRLQ01968 901 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 RIPK1Q13546 671 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 NFATC4Q14934 902 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 TGFBIQ15582 683 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 PFKFB4Q16877 469 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 CYB5D1Q6P9G0 228 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 XKR5Q6UX68 686 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 AMZ2Q86W34 360 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 SLC22A15Q8IZD6 547 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 FBXO39Q8N4B4 442 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 OXR1Q8N573 874 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 ASB11Q8WXH4 323 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 DLG3Q92796 817 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 MOCOSQ96EN8 888 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 C7orf26Q96N11 449 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 TMEM237Q96Q45 408 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 C20orf27Q9GZN8 174 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 PCED1AQ9H1Q7 454 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 ACSS2Q9NR19 701 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 SPATA6Q9NWH7 488 aaPredicted RBP10.99□□□□□ -0.65
USP3-218ENST00000560202 UTP6Q9NYH9 597 aaKnown RBP10.99□□□□□ -0.65
USP3-218ENST00000560202 NUDT4Q9NZJ9 180 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 CD274Q9NZQ7 290 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 SLC23A2Q9UGH3 650 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 TMCO1Q9UM00 188 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 OARD1Q9Y530 152 aa10.99□□□□□ -0.65
USP3-218ENST00000560202 A0A1W2PPC4 97 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 KLHL33A6NCF5 533 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 NCF1BA6NI72 391 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 METTL12A8MUP2 240 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 NCF1CA8MVU1 366 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 H3BM21 787 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 GFYI3L273 518 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 TOR1BO14657 336 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SLC16A5O15375 505 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SNX2O60749 519 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 LYPLA1O75608 230 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 C8GP07360 202 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 NCF1P14598 390 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 HTR1BP28222 390 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PDHA2P29803 388 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ABCE1P61221 599 aaKnown RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 PLOD1Q02809 727 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 ABRQ12979 859 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 NFE2L1Q14494 772 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 PHKG1Q16816 387 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 USP39Q53GS9 565 aaKnown RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 UBE2R2Q712K3 238 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 RAB44Q7Z6P3 723 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 ABI3BPQ7Z7G0 1075 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 GALNT13Q8IUC8 556 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 CCNYL1Q8N7R7 359 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 CADM4Q8NFZ8 388 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 OR56A4Q8NGH8 313 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 L3HYPDHQ96EM0 354 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SCARF2Q96GP6 870 aaPredicted RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 SPACA7Q96KW9 195 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 WDR92Q96MX6 357 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 ANKRD27Q96NW4 1050 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 SLC12A9Q9BXP2 914 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 DRC3Q9H069 523 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 RDH14Q9HBH5 336 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 FGF22Q9HCT0 170 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 MRPL40Q9NQ50 206 aaKnown RBP10.98□□□□□ -0.65
USP3-218ENST00000560202 TM7SF3Q9NS93 570 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 MOSPD1Q9UJG1 213 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 STX16-NPEPL1H3BU86 382 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 STX16O14662 325 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 FFAR2O15552 330 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 NPHS1O60500 1241 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 MATN4O95460 622 aa10.98□□□□□ -0.65
USP3-218ENST00000560202 S100BP04271 92 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms