RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FDXRP22570 491 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 TGM1P22735 817 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 TYK2P29597 1187 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SERPINB8P50452 374 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 CLCN7P51798 805 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 RAB10P61026 200 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 IL9RQ01113 521 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 EFTUD2Q15029 972 aaKnown RBP eCLIP9.04□□□□□ -0.962e-6■■■■□ 25.5
LDLR-210ENST00000559340 NR0B2Q15466 257 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 DEFB133Q30KQ1 61 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 BEND6Q5SZJ8 279 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 C6orf132Q5T0Z8 1188 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 RBM20Q5T481 1227 aaKnown RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 MROH9Q5TGP6 573 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 STPG1Q5TH74 334 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 IYDQ6PHW0 289 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 LRIG3Q6UXM1 1119 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 DBX2Q6ZNG2 339 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 RAPH1Q70E73 1250 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 HDXQ7Z353 690 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 NRROSQ86YC3 692 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 GATAD2AQ86YP4 633 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SLC22A15Q8IZD6 547 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 MYO1HQ8N1T3 1032 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SLC25A45Q8N413 288 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 PNPLA1Q8N8W4 532 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 FAM181AQ8N9Y4 354 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 PHC3Q8NDX5 983 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 CCL4L1Q8NHW4 92 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 NETO1Q8TDF5 533 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 RHBDD1Q8TEB9 315 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 DCAKDQ8WVC6 231 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SKA2Q8WVK7 121 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 ANKRD7Q92527 254 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 CXorf40BQ96DE9 158 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 ATXN7L3BQ96GX2 97 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 PDLIM5Q96HC4 596 aaKnown RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 NDNQ99608 321 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 MCMBPQ9BTE3 642 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 TMEM109Q9BVC6 243 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 TRIM54Q9BYV2 358 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 STMN4Q9H169 189 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 EPB41L4BQ9H329 900 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 ACBD3Q9H3P7 528 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SLC32A1Q9H598 525 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 MVB12BQ9H7P6 319 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 IL21RQ9HBE5 538 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 SLC17A6Q9P2U8 582 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 GULP1Q9UBP9 304 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 FAM8A1Q9UBU6 413 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 POLG2Q9UHN1 485 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 PNMA8BQ9ULN7 279 aaPredicted RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 PLAAQ9Y263 795 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 MTO1Q9Y2Z2 717 aaKnown RBP9.04□□□□□ -0.96
LDLR-210ENST00000559340 ACOT9Q9Y305 439 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 PLEKHM1Q9Y4G2 1056 aa9.04□□□□□ -0.96
LDLR-210ENST00000559340 DMDP11532 3685 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 A0A087X1B8 175 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TLDC2A0PJX2 215 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CCDC189A1A4V9 331 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 GOLGA6L10A6NI86 522 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 PRR19A6NJB7 356 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 ZBTB14O43829 449 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 PIAS1O75925 651 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 FAM155BO75949 473 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 LDOC1O95751 146 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 MT-ND3P03897 115 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 MYZAPP0CAP1 466 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 COL6A2P12110 1019 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 H2AFXP16104 143 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 KRT15P19012 456 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 RPL10P27635 214 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 MAP4P27816 1152 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 SLC26A3P40879 764 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CCNFP41002 786 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 KPNA2P52292 529 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 TAS2R39P59534 338 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 DAB2P98082 770 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 C14orf28Q4W4Y0 310 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 KCTD16Q68DU8 428 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CAPRIN2Q6IMN6 1127 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 PAQR3Q6TCH7 311 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 UNC5DQ6UXZ4 953 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TIFABQ6ZNK6 161 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 MICALCLQ6ZW33 695 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 KANSL1Q7Z3B3 1105 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TBC1D1Q86TI0 1168 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 PDZD3Q86UT5 571 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 RAB42Q8N4Z0 105 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 EID2Q8N6I1 236 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 ARL10Q8N8L6 244 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 SIDT2Q8NBJ9 832 aaKnown RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 LKAAEAR1Q8TD35 194 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CD200R1Q8TD46 325 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 ACMSDQ8TDX5 336 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 TFGQ92734 400 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 NAT6Q93015 286 aa9.03□□□□□ -0.96
LDLR-210ENST00000559340 CCDC97Q96F63 343 aaPredicted RBP9.03□□□□□ -0.96
LDLR-210ENST00000559340 C12orf66Q96MD2 445 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms