RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PPM1MQ96MI6 270 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 LRRC3BQ96PB8 259 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 SLC29A1Q99808 456 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ZDHHC4Q9NPG8 344 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 SPATS2LQ9NUQ6 558 aaKnown RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 TRBV5-4A0A0C4DH59 114 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 AKAP10O43572 662 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 TLL1O43897 1013 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 LEFTY1O75610 366 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ARHGEF15O94989 841 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 FGBP02675 491 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 SYN1P17600 705 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 OXTRP30559 389 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ETV3P41162 512 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 PSMD8P48556 350 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 NEK2P51955 445 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 RPL26P61254 145 aaKnown RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 PCBP2Q15366 365 aaKnown RBP eCLIP10.43□□□□□ -0.741e-6■■■■■ 57.5
CUX1-217ENST00000558836 GSTA3Q16772 222 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 SLC22A15Q8IZD6 547 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 PDLIM5Q96HC4 596 aaKnown RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 ZFYVE19Q96K21 471 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 NR1H4Q96RI1 486 aaPredicted RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 HTATIP2Q9BUP3 242 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 EMILIN2Q9BXX0 1053 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ACTL8Q9H568 366 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ARL15Q9NXU5 204 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 OPTCQ9UBM4 332 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 INSL6Q9Y581 213 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 AP4B1Q9Y6B7 739 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 KIAA0355O15063 1070 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 LSM1O15116 133 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 KIF1CO43896 1103 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 MATN4O95460 622 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 RPS3P23396 243 aaKnown RBP eCLIP10.42□□□□□ -0.74
CUX1-217ENST00000558836 NSG1P42857 185 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 MAPK8P45983 427 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 RPIAP49247 311 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 RCAN2Q14206 197 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 HMBOX1Q6NT76 420 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 IYDQ6PHW0 289 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 HSD11B1LQ7Z5J1 315 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 C12orf76Q8N812 135 aaPredicted RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 ECHDC3Q96DC8 303 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 NUSAP1Q9BXS6 441 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 CD244Q9BZW8 370 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 IL23AQ9NPF7 189 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 SPHK2Q9NRA0 654 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 MRGBPQ9NV56 204 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 SUN2Q9UH99 717 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 CNOT6Q9ULM6 557 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 OARD1Q9Y530 152 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 TRIOO75962 3097 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 SCN8AQ9UQD0 1980 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 C7orf72A4D263 438 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 ANTXRLA6NF34 631 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 PDLIM1O00151 329 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 PGM3O95394 542 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 POP4O95707 220 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 PTPN2P17706 415 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 CSNK1DP48730 415 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 METAP1P53582 386 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 MTPNP58546 118 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 SELPLGQ14242 412 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 CRY1Q16526 586 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 TCEAL5Q5H9L2 206 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 OGFOD2Q6N063 350 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 GDPD4Q6W3E5 623 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 MACC1Q6ZN28 852 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 SPATA19Q7Z5L4 167 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 RNF175Q8N4F7 328 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 PDPRQ8NCN5 879 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 ATG10Q9H0Y0 220 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 RIC8BQ9NVN3 520 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 ITM2BQ9Y287 266 aa10.42□□□□□ -0.74
CUX1-217ENST00000558836 TNPO3Q9Y5L0 923 aaKnown RBP10.42□□□□□ -0.74
CUX1-217ENST00000558836 A0A1B0GTW7 788 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 TMEM202A6NGA9 273 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 SAC3D1A6NKF1 404 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 BBIP1A8MTZ0 92 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 UPK3BL1B0FP48 263 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 UPK3BL2E5RIL1 263 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 INPP4BO15327 924 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 VPS4BO75351 444 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 OTCP00480 354 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 C8BP07358 591 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 GRIA2P42262 883 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 SPINT3P49223 89 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 HTRA4P83105 476 aaPredicted RBP10.41□□□□□ -0.74
CUX1-217ENST00000558836 CREMQ03060 361 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 LIPEQ05469 1076 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 GPR33Q49SQ1 333 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 NANOGP8Q6NSW7 305 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 CYP20A1Q6UW02 462 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 NECAB2Q7Z6G3 386 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 MINDY1Q8N5J2 469 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 KRTCAP2Q8N6L1 136 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 OR2T34Q8NGX1 318 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 OR2T3Q8NH03 318 aa10.41□□□□□ -0.74
CUX1-217ENST00000558836 PIP4K2CQ8TBX8 421 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms