RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 VIPR1P32241 457 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ETV3P41162 512 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 MAGEA3P43357 314 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 SEC24CP53992 1094 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 SLC18A1P54219 525 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 EPHB1P54762 984 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 MAZP56270 477 aaKnown RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 NIPAL4Q0D2K0 466 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 IHHQ14623 411 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 NFATC4Q14934 902 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TMED2Q15363 201 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CNGA3Q16281 694 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 NADK2Q4G0N4 442 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CRTC2Q53ET0 693 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 PRR30Q53SZ7 412 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 RALGPS1Q5JS13 557 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ANKRD20A2Q5SQ80 823 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 HP1BP3Q5SSJ5 553 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ANKRD20A1Q5TYW2 823 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ANKRD20A3Q5VUR7 823 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 C3orf62Q6ZUJ4 267 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF438Q7Z4V0 828 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 HSD11B1LQ7Z5J1 315 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TAF8Q7Z7C8 310 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM135Q86UB9 458 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TSPAN33Q86UF1 283 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 C17orf82Q86X59 251 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 NDUFAF2Q8N183 169 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TAB3Q8N5C8 712 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 PRR7Q8TB68 274 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 PIH1D2Q8WWB5 315 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 KIAA1143Q96AT1 154 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 SCRN2Q96FV2 425 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CEP41Q9BYV8 373 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 XAB2Q9HCS7 855 aaKnown RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 KLQ9UEF7 1012 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 MOSPD1Q9UJG1 213 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CHMP2BQ9UQN3 213 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 CHKBQ9Y259 395 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 KCTD3Q9Y597 815 aa12.32□□□□□ -0.44
SHMT2-230ENST00000557427 PRRC2CQ9Y520 2896 aaKnown RBP12.32□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM120BA0PK00 339 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM202A6NGA9 273 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 NPIPB15A6NHN6 443 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CACNB4O00305 520 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 EBAG9O00559 213 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 SORBS2O94875 1100 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 TNFP01375 233 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 APRTP07741 180 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 NFKBIAP25963 317 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 MAP4P27816 1152 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CSF2RBP32927 897 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CCT5P48643 541 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 SARNPP82979 210 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 PPIDQ08752 370 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 MTM1Q13496 603 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 NR1D2Q14995 579 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 AGERQ15109 404 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 PARP6Q2NL67 630 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 DCAF12Q5T6F0 453 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 NKAIN2Q5VXU1 208 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 PNCKQ6P2M8 343 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 ADGRD1Q6QNK2 874 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 Q6ZVL8 140 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 ZNF534Q76KX8 674 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 KDELC2Q7Z4H8 507 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CAND1Q86VP6 1230 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 PELI3Q8N2H9 469 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 AGBL5Q8NDL9 886 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 ARRDC2Q8TBH0 407 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 FBF1Q8TES7 1133 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 OR1E3Q8WZA6 343 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CHMP6Q96FZ7 201 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 COQ10AQ96MF6 247 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 WDR92Q96MX6 357 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CYTH2Q99418 400 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CTRCQ99895 268 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 LGR4Q9BXB1 951 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 ASPSCR1Q9BZE9 553 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 TMEM168Q9H0V1 697 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 DPEP2Q9H4A9 486 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 SUDS3Q9H7L9 328 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 SSU72Q9NP77 194 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 MRPL40Q9NQ50 206 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 SPATS2LQ9NUQ6 558 aaKnown RBP12.31□□□□□ -0.44
SHMT2-230ENST00000557427 TBK1Q9UHD2 729 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 CD84Q9UIB8 345 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 PRDM4Q9UKN5 801 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 DGKBQ9Y6T7 804 aa12.31□□□□□ -0.44
SHMT2-230ENST00000557427 B4E171 279 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 PRPF4O43172 522 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-230ENST00000557427 FZD6O60353 706 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 THRAP10827 490 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 LHCGRP22888 699 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 STX2P32856 288 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 TSPAN7P41732 249 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 CD86P42081 329 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 ABHD18Q0P651 414 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 WASHC5Q12768 1159 aa12.3□□□□□ -0.44
SHMT2-230ENST00000557427 ZBTB17Q13105 803 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms