RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 UNC5BQ8IZJ1 945 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 KRT222Q8N1A0 295 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ASZ1Q8WWH4 475 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ART4Q93070 314 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 TMEM159Q96B96 161 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CERS2Q96G23 380 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 TMEM74Q96NL1 305 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CNTNAP3BQ96NU0 1288 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 BIRC8Q96P09 236 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 DPYSL5Q9BPU6 564 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 TBC1D10AQ9BXI6 508 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CNTNAP3Q9BZ76 1288 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 EPB41L1Q9H4G0 881 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 RDH14Q9HBH5 336 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 FBXO6Q9NRD1 293 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 IARS2Q9NSE4 1012 aaKnown RBP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 FBXO5Q9UKT4 447 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CRYL1Q9Y2S2 319 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 PTPRBP23467 1997 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 UNC13CQ8NB66 2214 aa13.27□□□□□ -0.28
SHMT2-228ENST00000557302 ESYT3A0FGR9 886 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 SLC5A10A0PJK1 596 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 TMX2-CTNND1H3BSU7 103 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 KPNA5O15131 536 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 S1PR4O95977 384 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 APOA4P06727 396 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 NDUFS1P28331 727 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 CSE1LP55060 971 aaKnown RBP13.27□□□□□ -0.29
SHMT2-228ENST00000557302 INHBCP55103 352 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 GUCY2DQ02846 1103 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 HSPA14Q0VDF9 509 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 SQSTM1Q13501 440 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 KRT33BQ14525 404 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 FASTKD3Q14CZ7 662 aaKnown RBP13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PLCL1Q15111 1095 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 TRADDQ15628 312 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 GLE1Q53GS7 698 aaKnown RBP13.27□□□□□ -0.29
SHMT2-228ENST00000557302 ZNF789Q5FWF6 425 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 CTSL3PQ5NE16 218 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 NAPRTQ6XQN6 538 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 OTOAQ7RTW8 1153 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 B3GNT8Q7Z7M8 397 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PDZD3Q86UT5 571 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 FBXO25Q8TCJ0 367 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 SEC14L1Q92503 715 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 ATXN7L3BQ96GX2 97 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 NUDT22Q9BRQ3 303 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 FOXP3Q9BZS1 431 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PHACTR1Q9C0D0 580 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 STRADBQ9C0K7 418 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 CCDC68Q9H2F9 335 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PLAC1Q9HBJ0 212 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 SAYSD1Q9NPB0 183 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PPANQ9NQ55 473 aaKnown RBP13.27□□□□□ -0.29
SHMT2-228ENST00000557302 ENTPD2Q9Y5L3 495 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 COLEC10Q9Y6Z7 277 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 AKAP13Q12802 2813 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 PIKFYVEQ9Y2I7 2098 aa13.27□□□□□ -0.29
SHMT2-228ENST00000557302 NIPSNAP2O75323 286 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 UBXN7O94888 489 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 PROS1P07225 676 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 F7P08709 466 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-228ENST00000557302 PKMP14618 531 aaKnown RBP13.26□□□□□ -0.29
SHMT2-228ENST00000557302 AMD1P17707 334 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 AOAHP28039 575 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 CCKBRP32239 447 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 CSF2RBP32927 897 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 MPP1Q00013 466 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 FRG1Q14331 258 aaKnown RBP13.26□□□□□ -0.29
SHMT2-228ENST00000557302 ZDHHC24Q6UX98 284 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 KIAA0408Q6ZU52 694 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 TMPRSS9Q7Z410 1059 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 SLITRK4Q8IW52 837 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 CNTN4Q8IWV2 1026 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 SLC22A15Q8IZD6 547 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 C2CD4AQ8NCU7 369 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-228ENST00000557302 GSDMBQ8TAX9 411 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 PYROXD1Q8WU10 500 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 ZFPM2Q8WW38 1151 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 NCSTNQ92542 709 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 TFGQ92734 400 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-228ENST00000557302 GATA6Q92908 595 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 FERD3LQ96RJ6 166 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 KIR3DX1Q9H7L2 352 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 MVB12BQ9H7P6 319 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 FAM114A2Q9NRY5 505 aa13.26□□□□□ -0.29
SHMT2-228ENST00000557302 TRABD2BA6NFA1 517 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 BHMG1C9JSJ3 638 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 E5RI56 91 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 GPC4O75487 556 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 HOXB3P14651 431 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 TYRP1P17643 537 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 CHRM3P20309 590 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 CAPZBP47756 277 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 LEPRP48357 1165 aaKnown RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 CARSP49589 748 aaKnown RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 CFHR1Q03591 330 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 ZFP36L1Q07352 338 aaKnown RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 PLEKHS1Q5SXH7 462 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms