RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 GPR39O43194 453 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 SERPINC1P01008 464 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 IGHEP01854 428 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 ALPPP05187 535 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 HBQ1P09105 142 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 H2AFZP0C0S5 128 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 SLC35G4P0C7Q5 338 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 HLA-DPA1P20036 260 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 PRDX3P30048 256 aaKnown RBP12.3□□□□□ -0.44
SHMT2-223ENST00000556689 AKT1P31749 480 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 OTX2P32243 289 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 CA5AP35218 305 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 HADHAP40939 763 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 GLRBP48167 497 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 WNT3AP56704 352 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 PTCHD3Q3KNS1 767 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF789Q5FWF6 425 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 SIRPB2Q5JXA9 342 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 IGFL3Q6UXB1 125 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 NPNTQ6UXI9 565 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 H2AFVQ71UI9 128 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 B4GALNT4Q76KP1 1039 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 DET1Q7L5Y6 550 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 SLC25A41Q8N5S1 370 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 CLEC1AQ8NC01 280 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF398Q8TD17 642 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 ANP32BQ92688 251 aaKnown RBP12.3□□□□□ -0.44
SHMT2-223ENST00000556689 TEKT5Q96M29 485 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 DHRS4Q9BTZ2 278 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 ILKAPQ9H0C8 392 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-223ENST00000556689 SRMSQ9H3Y6 488 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 HACD3Q9P035 362 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 POMT2Q9UKY4 750 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 HEBP2Q9Y5Z4 205 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 A0A1W2PQJ5 194 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 GSAPA4D1B5 854 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 E7EQ34 232 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 PEX12O00623 359 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF749O43361 778 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 BUD23O43709 281 aaKnown RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 KLF7O75840 302 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 IPO13O94829 963 aaKnown RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 POLBP06746 335 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 PYGMP11217 842 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ELAVL4P26378 380 aaKnown RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ZBED6P86452 979 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 MYBPC3Q14896 1274 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 NOMO1Q15155 1222 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 CRB2Q5IJ48 1285 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 MLIPQ5VWP3 458 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 GLT6D1Q7Z4J2 308 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 VSIG1Q86XK7 387 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 CFAP206Q8IYR0 622 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ZADH2Q8N4Q0 377 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ACVR1CQ8NER5 493 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 BLOC1S5Q8TDH9 187 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 CPLX3Q8WVH0 158 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 LCN9Q8WX39 176 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 TM9SF4Q92544 642 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 OLFM3Q96PB7 478 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 BARD1Q99728 777 aaKnown RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 C17orf62Q9BQA9 187 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 CCM2Q9BSQ5 444 aa12.29□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF552Q9H707 407 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-223ENST00000556689 C3orf70A6NLC5 250 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 GAPDHSO14556 408 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 LDB2O43679 373 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 TPM3P06753 285 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 CD63P08962 238 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 ST6GAL1P15907 406 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 PTPN3P26045 913 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 HNRNPH3P31942 346 aaKnown RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 CHRNA4P43681 627 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 LMAN1P49257 510 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 MESDQ14696 234 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 ODF2Q5BJF6 829 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 DCAF10Q5QP82 559 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 KDELC1Q6UW63 502 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 SPOCD1Q6ZMY3 1216 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 BZW1Q7L1Q6 419 aaKnown RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 MRGPREQ86SM8 312 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 RFX6Q8HWS3 928 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 GPR135Q8IZ08 494 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 GALNT16Q8N428 558 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 CTNNBL1Q8WYA6 563 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 LINC00615Q96LM1 132 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 PHF12Q96QT6 1004 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 FERD3LQ96RJ6 166 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 AGPAT4Q9NRZ5 378 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 SMOXQ9NWM0 555 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 FAM8A1Q9UBU6 413 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 GPN3Q9UHW5 284 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-223ENST00000556689 CAPN11Q9UMQ6 739 aa12.28□□□□□ -0.44
SHMT2-223ENST00000556689 STX7O15400 261 aaKnown RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 HNRNPRO43390 633 aaKnown RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 CD68P34810 354 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 NR2C2P49116 596 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 DYNLT1P63172 113 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 LLGL1Q15334 1064 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 SLC1A5Q15758 541 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms