RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 DPH2Q9BQC3 489 aaPredicted RBP12.52□□□□□ -0.41
VPS29-211ENST00000553128 ADGRE3Q9BY15 652 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 CEP41Q9BYV8 373 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 KIR3DX1Q9H7L2 352 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A7Q9HAW7 530 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A10Q9HAW8 530 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 UGT1A8Q9HAW9 530 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 MAGEE1Q9HCI5 957 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 SLC6A20Q9NP91 592 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 C1GALT1Q9NS00 363 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 FAM8A1Q9UBU6 413 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 AMACRQ9UHK6 382 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 MYO7BQ6PIF6 2116 aa12.52□□□□□ -0.41
VPS29-211ENST00000553128 PCNX1Q96RV3 2341 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 GSAPA4D1B5 854 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 H3BMH7 237 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 C19orf84I3L1E1 186 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 BTN3A3O00478 584 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 KCNJ13O60928 360 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 MSL3P1P0C860 447 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 PRDX3P30048 256 aaKnown RBP12.51□□□□□ -0.41
VPS29-211ENST00000553128 ARSEP51690 589 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 TDGF1P3P51864 188 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 GBE1Q04446 702 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 KRT81Q14533 505 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 PCSK7Q16549 785 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 DEFB110Q30KQ9 67 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 ATP13A4Q4VNC1 1196 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 CCDC122Q5T0U0 273 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 METRNLQ641Q3 311 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 ZNF324BQ6AW86 544 aaPredicted RBP12.51□□□□□ -0.41
VPS29-211ENST00000553128 CPNE8Q86YQ8 564 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 LILRA3Q8N6C8 439 aaPredicted RBP12.51□□□□□ -0.41
VPS29-211ENST00000553128 TEKT4Q8WW24 435 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 FATE1Q969F0 183 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 RMDN2Q96LZ7 410 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 SPRTNQ9H040 489 aaPredicted RBP12.51□□□□□ -0.41
VPS29-211ENST00000553128 CLSTN2Q9H4D0 955 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 RAD18Q9NS91 495 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 OLAHQ9NV23 265 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 DHCR7Q9UBM7 475 aaKnown RBP12.51□□□□□ -0.41
VPS29-211ENST00000553128 SERTAD3Q9UJW9 196 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 FBXL4Q9UKA2 621 aa12.51□□□□□ -0.41
VPS29-211ENST00000553128 CCDC66A2RUB6 948 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 AGPSO00116 658 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 BTN3A1O00481 513 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 KLHL41O60662 606 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 IGHEP01854 428 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 FERP16591 822 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 HOXB4P17483 251 aaPredicted RBP12.5□□□□□ -0.41
VPS29-211ENST00000553128 AIMP2Q13155 320 aaKnown RBP12.5□□□□□ -0.41
VPS29-211ENST00000553128 DPYSL3Q14195 570 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 NOMO1Q15155 1222 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 CDSNQ15517 529 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 CYP2A13Q16696 494 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 PRAMEF13Q5VWM6 474 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 B3GNTL1Q67FW5 361 aaPredicted RBP12.5□□□□□ -0.41
VPS29-211ENST00000553128 MRPL14Q6P1L8 145 aaKnown RBP12.5□□□□□ -0.41
VPS29-211ENST00000553128 FAM180AQ6UWF9 173 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 DET1Q7L5Y6 550 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 FAM71BQ8TC56 605 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 TTC25Q96NG3 672 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 TAAR6Q96RI8 345 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 PITPNM3Q9BZ71 974 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 DEF6Q9H4E7 631 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 FAM60AQ9NP50 221 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 CHST11Q9NPF2 352 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 IL26Q9NPH9 171 aa12.5□□□□□ -0.41
VPS29-211ENST00000553128 GPN3Q9UHW5 284 aaPredicted RBP12.5□□□□□ -0.41
VPS29-211ENST00000553128 PCM1Q15154 2024 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 TRGV8A0A0C4DH27 118 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 DDX3XO00571 662 aaKnown RBP eCLIP12.49□□□□□ -0.411e-8■■□□□ 11.8
VPS29-211ENST00000553128 PCDH17O14917 1159 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 MT-CYBP00156 380 aaPredicted RBP12.49□□□□□ -0.41
VPS29-211ENST00000553128 PRKAA1Q13131 559 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 VWA2Q5GFL6 755 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 FNBP1LQ5T0N5 605 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 CCDC183Q5T5S1 534 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 AGAP7PQ5VUJ5 663 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 E4F1Q66K89 784 aaPredicted RBP12.49□□□□□ -0.41
VPS29-211ENST00000553128 RHBDD2Q6NTF9 364 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 ZNF571Q7Z3V5 609 aaPredicted RBP12.49□□□□□ -0.41
VPS29-211ENST00000553128 CDH24Q86UP0 819 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 ZNF808Q8N4W9 903 aaPredicted RBP12.49□□□□□ -0.41
VPS29-211ENST00000553128 PQLC3Q8N755 202 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 BCORP1Q8N888 145 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 CCNYQ8ND76 341 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 SPATA22Q8NHS9 363 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 BRSK1Q8TDC3 778 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 PTERQ96BW5 349 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 AGAP4Q96P64 663 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 MESP1Q9BRJ9 268 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 SYTL2Q9HCH5 934 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 SLC22A11Q9NSA0 550 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 FANCLQ9NW38 375 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 IFT80Q9P2H3 777 aaPredicted RBP12.49□□□□□ -0.41
VPS29-211ENST00000553128 SH3BGRL2Q9UJC5 107 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 SCINQ9Y6U3 715 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 NAV3Q8IVL0 2385 aa12.49□□□□□ -0.41
VPS29-211ENST00000553128 DOCK10Q96BY6 2186 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms