RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-210ENST00000551981 ASF1BQ9NVP2 202 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 SMOXQ9NWM0 555 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 IL17CQ9P0M4 197 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 SERTAD3Q9UJW9 196 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 POMT2Q9UKY4 750 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 B3GNT3Q9Y2A9 372 aa13.8□□□□□ -0.2
CHMP1A-210ENST00000551981 PIKFYVEQ9Y2I7 2098 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 SEC16AO15027 2179 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 GSAPA4D1B5 854 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 ANKUB1A6NFN9 424 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 GPR39O43194 453 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 LCA5LO95447 670 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 IGHEP01854 428 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CAPN1P07384 714 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 MSL3P1P0C860 447 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 PTPN3P26045 913 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 OTX2P32243 289 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 HADHAP40939 763 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 WNT3AP56704 352 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 DYNLT1P63172 113 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 MESDQ14696 234 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 NOMO1Q15155 1222 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 PLEKHN1Q494U1 663 aaPredicted RBP13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 BZW1Q7L1Q6 419 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 DET1Q7L5Y6 550 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 RFX6Q8HWS3 928 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CISD2Q8N5K1 135 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 SLC25A41Q8N5S1 370 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 TTC13Q8NBP0 860 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CLEC1AQ8NC01 280 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 OR4E2Q8NGC2 313 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 OR1L3Q8NH93 324 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CPLX3Q8WVH0 158 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 LCN9Q8WX39 176 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 TM9SF4Q92544 642 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 FER1L6-AS2Q96M78 137 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 PPM1MQ96MI6 270 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CCM2Q9BSQ5 444 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 SRMSQ9H3Y6 488 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 FAM8A1Q9UBU6 413 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 CAPN11Q9UMQ6 739 aa13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 LUC7L2Q9Y383 392 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-210ENST00000551981 C3orf70A6NLC5 250 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 E7EQ34 232 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 PEX12O00623 359 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 DDX3YO15523 660 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 IPO13O94829 963 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 PRAMEF1O95521 474 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 KRT1P04264 644 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 NFKB1P19838 968 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 NR2C2P49116 596 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 PRKD1Q15139 912 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 PTCHD3Q3KNS1 767 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 KDELC1Q6UW63 502 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 B4GALNT4Q76KP1 1039 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 MRGPREQ86SM8 312 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 ACVR1CQ8NER5 493 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 SPDYE1Q8NFV5 336 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 ZNF398Q8TD17 642 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 TFB1MQ8WVM0 346 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 RMDN2Q96LZ7 410 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 ANP32EQ9BTT0 268 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 NENFQ9UMX5 172 aa13.78□□□□□ -0.2
CHMP1A-210ENST00000551981 STX7O15400 261 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 BUD23O43709 281 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 POLBP06746 335 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 CD63P08962 238 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 RALBP11234 206 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 PRDX3P30048 256 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 CHRNA4P43681 627 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 TPM4P67936 248 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 MYBPC3Q14896 1274 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 SLC1A5Q15758 541 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 BCL7AQ4VC05 210 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 ZNF789Q5FWF6 425 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 IGFL3Q6UXB1 125 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 CFAP206Q8IYR0 622 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 GPR135Q8IZ08 494 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 SLC34A3Q8N130 599 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 GALNT16Q8N428 558 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 DCUN1D1Q96GG9 259 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 LINC00615Q96LM1 132 aaPredicted RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 FSD1LQ9BXM9 530 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 PACSIN1Q9BY11 444 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 PITPNM3Q9BZ71 974 aa13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 KLHL8Q9P2G9 620 aaPredicted RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 GPN3Q9UHW5 284 aaPredicted RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 COPG1Q9Y678 874 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 ANKRD17O75179 2603 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-210ENST00000551981 F5H423 210 aaPredicted RBP13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 GAPDHSO14556 408 aaPredicted RBP13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 ZNF749O43361 778 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 TMEM253P0C7T8 217 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 ST6GAL1P15907 406 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 TNFRSF8P28908 595 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 CD68P34810 354 aaPredicted RBP13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 CA5AP35218 305 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 PBX1P40424 430 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 FOLR3P41439 243 aa13.76□□□□□ -0.21
CHMP1A-210ENST00000551981 ARHGAP25P42331 645 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms