RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SOHLH2Q9NX45 425 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 AMACRQ9UHK6 382 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 OSGIN2Q9Y236 505 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 SCINQ9Y6U3 715 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 CENPEQ02224 2701 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 OTOGQ6ZRI0 2925 aa10.22□□□□□ -0.77
VPS29-208ENST00000550267 LGALS16A8MUM7 142 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 PRSS44E7EML9 344 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZG16O60844 167 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZBTB11O95625 1053 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 CCDC172P0C7W6 258 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 BPIP17213 487 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 VCLP18206 1134 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 CCNCP24863 283 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 UBXN1Q04323 297 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 TMEM115Q12893 351 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 BECN1Q14457 450 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 KRT81Q14533 505 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 NCF4Q15080 339 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 PAFAH1B3Q15102 231 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 LLGL1Q15334 1064 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZRSR2Q15696 482 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 IFI16Q16666 785 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 CCDC122Q5T0U0 273 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 TMTC4Q5T4D3 741 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 DUS1LQ6P1R4 473 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 FAM83HQ6ZRV2 1179 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 TMC3Q7Z5M5 1100 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 CUZD1Q86UP6 607 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZC3H18Q86VM9 953 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 KCNMB4Q86W47 210 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 OOSP2Q86WS3 158 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 RAB43Q86YS6 212 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 SYTL1Q8IYJ3 562 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ST6GALNAC3Q8NDV1 305 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 TEKT4Q8WW24 435 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ADGRE3Q9BY15 652 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZNF552Q9H707 407 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZBTB20Q9HC78 741 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 HAUS2Q9NVX0 235 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 FANCLQ9NW38 375 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 NFKBIL1Q9UBC1 381 aaPredicted RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 ZNF711Q9Y462 761 aa10.21□□□□□ -0.77
VPS29-208ENST00000550267 CFAP20Q9Y6A4 193 aaKnown RBP10.21□□□□□ -0.77
VPS29-208ENST00000550267 OR6C74A6NCV1 312 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 M0R082 166 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 MASP2O00187 686 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 E2F3O00716 465 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ALPPP05187 535 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 KPNA2P52292 529 aaKnown RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 PER3P56645 1201 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 SLC25A11Q02978 314 aaKnown RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 GTF2H3Q13889 308 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 MYBPC3Q14896 1274 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ANO6Q4KMQ2 910 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ATP13A5Q4VNC0 1218 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ZNF789Q5FWF6 425 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 CT47A1Q5JQC4 288 aaPredicted RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 HIVEP3Q5T1R4 2406 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 IGFL3Q6UXB1 125 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 SPOCD1Q6ZMY3 1216 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 Q6ZS92 163 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 MRGPREQ86SM8 312 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 GALNT16Q8N428 558 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ZADH2Q8N4Q0 377 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 OR1L3Q8NH93 324 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ZNF417Q8TAU3 575 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 GDAP1Q8TB36 358 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 FATE1Q969F0 183 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 TSGA13Q96PP4 275 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 VPS35Q96QK1 796 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ERGIC2Q96RQ1 377 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 TRIB3Q96RU7 358 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ZNF587Q96SQ5 575 aaPredicted RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 GPR63Q9BZJ6 419 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 ACTR5Q9H9F9 607 aaPredicted RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 AGPAT4Q9NRZ5 378 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 RAD18Q9NS91 495 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 IMP3Q9NV31 184 aaKnown RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 TMEM63CQ9P1W3 806 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 LIMA1Q9UHB6 759 aaKnown RBP10.2□□□□□ -0.78
VPS29-208ENST00000550267 BTRCQ9Y297 605 aa10.2□□□□□ -0.78
VPS29-208ENST00000550267 SLC9B1P1A6NJY1 282 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 TMEM150CB9EJG8 249 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 DDX3XO00571 662 aaKnown RBP eCLIP10.19□□□□□ -0.781e-16■□□□□ 8.3
VPS29-208ENST00000550267 LDB2O43679 373 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 POP7O75817 140 aaKnown RBP10.19□□□□□ -0.78
VPS29-208ENST00000550267 MTHFD1P11586 935 aaKnown RBP10.19□□□□□ -0.78
VPS29-208ENST00000550267 POLR2CP19387 275 aaPredicted RBP10.19□□□□□ -0.78
VPS29-208ENST00000550267 CYP2A7P20853 494 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 CDH3P22223 829 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 CTSCP53634 463 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 DMPKQ09013 629 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 XRCC4Q13426 336 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 NFE2L1Q14494 772 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 DCAF10Q5QP82 559 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 ARMC6Q6NXE6 501 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 ZNF571Q7Z3V5 609 aaPredicted RBP10.19□□□□□ -0.78
VPS29-208ENST00000550267 AMZ2Q86W34 360 aa10.19□□□□□ -0.78
VPS29-208ENST00000550267 CNTD1Q8N815 330 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms